Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46445686
Identifier: 46445686
GI number: 46445686
Start: 95214
End: 96353
Strand: Reverse
Name: 46445686
Synonym: pc0052
Alternate gene names: NA
Gene position: 96353-95214 (Counterclockwise)
Preceding gene: 46445687
Following gene: 46445685
Centisome position: 3.99
GC content: 42.81
Gene sequence:
>1140_bases ATGCAAGCTCTTGCCCACAAAATGAACACTTGTTTTATTCTTTACTCATTTTCTTTCGAAAATACAGATGACATTGCCAC TTGGATTATTCCTTCTCAAGGCGAAATCGTTTGTCAGCAGCTTTCTCTTGGAATTTTGACAGAAGAGGTCAAAGAAGCAG CGCAGGTTTTCAAAACGTTCCCTTTTATTGTTGAGCCAACAGTTGCTAAAAGAAGACCTTTTCTGCGTCCGAAAAAAACT CGTAGTTCTGCTACGTATAATGTTCCAGATGAGTTAACTCGAGGAGATCCCGATAAGAGTGCAACCTCTGCTGTTTTGCA ATCTTTTAAAGAACGCCTTTCTCTCTGGTATGAAACTTTGATTGCTCCACTTGAATCTCATCTCCCCAAAGATCCACAAC AAGTCGTGACGATTATTCCCGATGGTTTTCTCGCTCAAATTCCATTCGCTGCCTTTTTAGATAAAGAGGGAAAATATTTC ATAGAAAAACATCCCATTTCCATTGCCCCCTCTATTGGCATACTCAAATTATTGGATGAAATTCCTAAAGATTTCTCAGA AAATTCTCTCGTGATTGGTAATCCCACAACACCTCATCCAAAAGATTCGTTACCATTTGCGGAAAAAGAAGCTCAAGCCA TTGTCGCTCCTCTGCTTAAAACAACTCCGGAAAAAACTCTCTTACAAGACAGCGCTACAGTCCAGCGCGTTTTAGAGGGG ATGCGAGATGCACGCTGGATTCATCTTGTTTGTCATGGTTCGACAGGCGAAAAGCCCGAAGAAAAGCTTGATCCTCATTC CGTTTTTGAAGGTCTTTTCAAGCTTGCTCCCGAACAAAAGAATCCTAATGGCTATCTTCATGCGCAAGAAATTGCGGTGC TTAGGCTGCGTACAGAGTTGGTTTTTATGAGTGCCTGTTTCTCTGGTAGAGGCAAGCTTCACGGGGAAGGAAGCGTTGGT CCCGTCTGGTCCTTTCTTGCCGCAGGCGCTTTGTCAACGGTCGCGACTTATTGGAGACTGCCAGATAGTGATCTAACCCT TCAAATGGTCGACACGTTCTATCGCCATCTTTTAGGCATTAGAAATGGAAAAGCTAAACAAAGCCCAAGCTTTGCAAAAA GCCATGATAATGGCTATTAG
Upstream 100 bases:
>100_bases CACAGATTTTAGACGTTCGCGTGCCTTAGTCTCTACTCTTACAAAAAAAATTCAACTTCAAAAGGAAGATTTTTTAACTT CTGGAGTCACAATCCAGGAA
Downstream 100 bases:
>100_bases ACAAAAACGTGAACAACCTCATCTATGGGGAGCTTTTTTCTTATCGGGACTACATGAATAAACAATTATAAATTGTTAGT TATTTATAGTTTGCTCATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MQALAHKMNTCFILYSFSFENTDDIATWIIPSQGEIVCQQLSLGILTEEVKEAAQVFKTFPFIVEPTVAKRRPFLRPKKT RSSATYNVPDELTRGDPDKSATSAVLQSFKERLSLWYETLIAPLESHLPKDPQQVVTIIPDGFLAQIPFAAFLDKEGKYF IEKHPISIAPSIGILKLLDEIPKDFSENSLVIGNPTTPHPKDSLPFAEKEAQAIVAPLLKTTPEKTLLQDSATVQRVLEG MRDARWIHLVCHGSTGEKPEEKLDPHSVFEGLFKLAPEQKNPNGYLHAQEIAVLRLRTELVFMSACFSGRGKLHGEGSVG PVWSFLAAGALSTVATYWRLPDSDLTLQMVDTFYRHLLGIRNGKAKQSPSFAKSHDNGY
Sequences:
>Translated_379_residues MQALAHKMNTCFILYSFSFENTDDIATWIIPSQGEIVCQQLSLGILTEEVKEAAQVFKTFPFIVEPTVAKRRPFLRPKKT RSSATYNVPDELTRGDPDKSATSAVLQSFKERLSLWYETLIAPLESHLPKDPQQVVTIIPDGFLAQIPFAAFLDKEGKYF IEKHPISIAPSIGILKLLDEIPKDFSENSLVIGNPTTPHPKDSLPFAEKEAQAIVAPLLKTTPEKTLLQDSATVQRVLEG MRDARWIHLVCHGSTGEKPEEKLDPHSVFEGLFKLAPEQKNPNGYLHAQEIAVLRLRTELVFMSACFSGRGKLHGEGSVG PVWSFLAAGALSTVATYWRLPDSDLTLQMVDTFYRHLLGIRNGKAKQSPSFAKSHDNGY >Mature_379_residues MQALAHKMNTCFILYSFSFENTDDIATWIIPSQGEIVCQQLSLGILTEEVKEAAQVFKTFPFIVEPTVAKRRPFLRPKKT RSSATYNVPDELTRGDPDKSATSAVLQSFKERLSLWYETLIAPLESHLPKDPQQVVTIIPDGFLAQIPFAAFLDKEGKYF IEKHPISIAPSIGILKLLDEIPKDFSENSLVIGNPTTPHPKDSLPFAEKEAQAIVAPLLKTTPEKTLLQDSATVQRVLEG MRDARWIHLVCHGSTGEKPEEKLDPHSVFEGLFKLAPEQKNPNGYLHAQEIAVLRLRTELVFMSACFSGRGKLHGEGSVG PVWSFLAAGALSTVATYWRLPDSDLTLQMVDTFYRHLLGIRNGKAKQSPSFAKSHDNGY
Specific function: Unknown
COG id: COG4995
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42229; Mature: 42229
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQALAHKMNTCFILYSFSFENTDDIATWIIPSQGEIVCQQLSLGILTEEVKEAAQVFKTF CCHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC PFIVEPTVAKRRPFLRPKKTRSSATYNVPDELTRGDPDKSATSAVLQSFKERLSLWYETL CCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH IAPLESHLPKDPQQVVTIIPDGFLAQIPFAAFLDKEGKYFIEKHPISIAPSIGILKLLDE HHHHHHHCCCCHHHEEEECCCCHHHHCCHHHHHCCCCCEEEEECCCEECCCHHHHHHHHH IPKDFSENSLVIGNPTTPHPKDSLPFAEKEAQAIVAPLLKTTPEKTLLQDSATVQRVLEG HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH MRDARWIHLVCHGSTGEKPEEKLDPHSVFEGLFKLAPEQKNPNGYLHAQEIAVLRLRTEL HCCCEEEEEEEECCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHH VFMSACFSGRGKLHGEGSVGPVWSFLAAGALSTVATYWRLPDSDLTLQMVDTFYRHLLGI HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC RNGKAKQSPSFAKSHDNGY CCCCCCCCCCHHCCCCCCC >Mature Secondary Structure MQALAHKMNTCFILYSFSFENTDDIATWIIPSQGEIVCQQLSLGILTEEVKEAAQVFKTF CCHHHHHCCEEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC PFIVEPTVAKRRPFLRPKKTRSSATYNVPDELTRGDPDKSATSAVLQSFKERLSLWYETL CCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH IAPLESHLPKDPQQVVTIIPDGFLAQIPFAAFLDKEGKYFIEKHPISIAPSIGILKLLDE HHHHHHHCCCCHHHEEEECCCCHHHHCCHHHHHCCCCCEEEEECCCEECCCHHHHHHHHH IPKDFSENSLVIGNPTTPHPKDSLPFAEKEAQAIVAPLLKTTPEKTLLQDSATVQRVLEG HHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH MRDARWIHLVCHGSTGEKPEEKLDPHSVFEGLFKLAPEQKNPNGYLHAQEIAVLRLRTEL HCCCEEEEEEEECCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHH VFMSACFSGRGKLHGEGSVGPVWSFLAAGALSTVATYWRLPDSDLTLQMVDTFYRHLLGI HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC RNGKAKQSPSFAKSHDNGY CCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA