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The map label for this gene is 45659030

Identifier: 45659030

GI number: 45659030

Start: 3937118

End: 3937786

Strand: Reverse

Name: 45659030

Synonym: LIC13208

Alternate gene names: NA

Gene position: 3937786-3937118 (Counterclockwise)

Preceding gene: 45659031

Following gene: 45659029

Centisome position: 92.06

GC content: 36.02

Gene sequence:

>669_bases
ATGAATTCTCTTCCAAACGTATCCGTCAATATGGCTATGACTCTAGACGGGAAGGTCTCTCGTCCAGATGGAAGGTGGTA
CGGACTTTCTTCCAGAAATGATAAGAAAAGAATGGATGAAATTCGCTCCAAGGCGGAAGTCTTAATTTTAGGAAAAAATT
CAATTTTAAATGATGATCCTGTAGTTCATCTTCGTTATGTTGATAACGTTCAAGATCCTCGTCCGGTGATCTTGGTCAGA
TCCGGAACGATTCCAAAAGACAAAAAAGTATTCCGTTTTTCTAAAATACCACCTTTGATTTTTTGTTTAGACGAAAATCA
TCATTTGATCCAAGAAAATCTTTCTTCCTGCGCACAGATCGTTCCAATCTCTGGAAATGATTTGAGTCCTTTAAAAGCTC
TCAAGGTTCTCTCCGAAATGGGTTATAGGGAAATTCTTTTAGAAGGTGGTCCTTCTTTAAACGATTCTTTCTTTCGGTTG
AATTTAGTTTCTAGAATTTATCTTACGATCGTTCCTTTTATAATCGGAAAAAAGGATCTTCCTTCGATTACGGGTGGGCG
CGAGGAGTATTTGGACTTTGATTTGAAAAAATGGAATTTAATTTCTTCAGAAACATTAGAAAATGAGATTTTTCTAATTT
ATGAAAATGAAATGTTTTTTCGGCCTTGA

Upstream 100 bases:

>100_bases
TTCAAAAACTCATGGATGATACCGGTGTCTCAACTGGTTGTGGAACTTGTTCCAGTGCGATTCTTAAAATTTTAGCCAAA
GAACTTAAAGTTTCGAGAGA

Downstream 100 bases:

>100_bases
TATTTTTTAAATTTTGTAATATGTCAGGTTTTGCTTTTTGTATTAAGAACTTGTCCCAAAACAGTTCAGTGTGGAAGCTA
CAACGAAAATTAAACGACAT

Product: riboflavin-specific deaminase/reductase

Products: NA

Alternate protein names: HTP reductase [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLRYVDNVQDPRPVILVR
SGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRL
NLVSRIYLTIVPFIIGKKDLPSITGGREEYLDFDLKKWNLISSETLENEIFLIYENEMFFRP

Sequences:

>Translated_222_residues
MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLRYVDNVQDPRPVILVR
SGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRL
NLVSRIYLTIVPFIIGKKDLPSITGGREEYLDFDLKKWNLISSETLENEIFLIYENEMFFRP
>Mature_222_residues
MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLRYVDNVQDPRPVILVR
SGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRL
NLVSRIYLTIVPFIIGKKDLPSITGGREEYLDFDLKKWNLISSETLENEIFLIYENEMFFRP

Specific function: Unknown

COG id: COG1985

COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HTP reductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006401
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF01872 RibD_C [H]

EC number: =1.1.1.193 [H]

Molecular weight: Translated: 25367; Mature: 25367

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP
CCCCCCCEEEEEEEECCCEECCCCCEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
VVHLRYVDNVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQI
EEEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHEE
VPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKKDL
EECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC
PSITGGREEYLDFDLKKWNLISSETLENEIFLIYENEMFFRP
CCCCCCHHHHHCCCCHHEEEECCCCCCCEEEEEEECCEEECC
>Mature Secondary Structure
MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP
CCCCCCCEEEEEEEECCCEECCCCCEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
VVHLRYVDNVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENLSSCAQI
EEEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHEE
VPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKKDL
EECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCC
PSITGGREEYLDFDLKKWNLISSETLENEIFLIYENEMFFRP
CCCCCCHHHHHCCCCHHEEEECCCCCCCEEEEEEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]