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The map label for this gene is fliF

Identifier: 45657269

GI number: 45657269

Start: 1709642

End: 1711342

Strand: Direct

Name: fliF

Synonym: LIC11392

Alternate gene names: 45657269

Gene position: 1709642-1711342 (Clockwise)

Preceding gene: 45657262

Following gene: 45657270

Centisome position: 39.97

GC content: 39.09

Gene sequence:

>1701_bases
ATGCCAGAGCAGTTACAGAAAATTTTAAATAACATCCGGGAATTTTTCACAACCCTGGATACTACTAAAAAACTCATCCT
GGGAGGGGTGGCTCTAACCGTTTTAATTGCGATTGGGATTCTCTCTACGATCTCTCTTCAAAAAAATAGGATGGTTCTGT
TTAAAGACTTAACCAGCAAGGATTTTGCAGAAGTAACTAAAAAACTGGATTCTCTCGGTTATCAATACGGTAGTTCCGAT
ACGAGTGTGATCACGGTCGATCCAGAACAAAGACAAGAAATCGTTACAAAACTCGCCCAAGAAAATTTAATTCCAGCCGG
GGTCCAAGGTTGGGAACTTTTTAACGTAGATAAATTTACCGAAACACAGTTCGACAAAGATATTAAAAAATATAGAGCTT
TAAAAGGTGCAATCGAACAGTCTCTTATGACACTTCGTTCTGTTGACAAGGCTTACGTAAATATAGCCTTTCCGGAAGAT
GAACTTTTTAGCTCCAATTCATCTCCTGTAAAAGCGTCCGTTATCTTGCACTATATTCCCGGAGTAGAATCCCTTTCTAG
AAAAGAAGTTAAAGGGATTGTCAACTTAGTCTCTAGAGCGGTTCCCAAATTAAAACCGGAAAATGTGAGTGTCGCAGACG
CGGATGGTAAAATCATCAGTGACTTTGAAGAAGACTTAGAAAAAGAAAGACTCGAACTTAGAATCGTTCAAGAAAAATTA
AGAATCGGAGAAGAACAAAGAATTCAACGTCTCATCGATATGAGAAACACTCTTCGTTGGCTTTTAGGCGGTGAAGACAG
AGTGGATATTACACGTTTTGAATATAATTTAAATTGGGATAAGGAATCTTATAAAGACAATTCCGTTTCGCCAGTTGTCG
CAATTCCAGATAATCCAAACACTCCTTATTCTGAACTAAAACTCGTAGACGGTTATTCGCTCAAAGTTTCTTCTAAAGAA
ACCAAAGAAGACTTTAAAGGTAGAGGTTTTACTCCCGATGGCCCTGCAGGAACCGAACCGAATATTGCTCCCGGCTATAA
AGATACAGACTATCAAAAAGCAGAATATAGCAAAGCCGAAAACATCAACAACTATGAATTCAACAGAAGGGTTTCTGAGG
TTCAAAAACAACCTTGGAAAGTAGAAAAGGTAAACTTATCCGTTGTTATTGATGGAGTCTGGGAAAAGAAAGAGAAAGAA
GACGGAACTGGTTACGATCGTAAATATGTTCCGGTTTCGGAAGACGAACTCAGACAGATTCGTAAAAATTTGGAATCTGC
AGTCGGAATTGATAAAGCCAGAGGAGATCAAATTTCTGTTATTACAATTCCAAAAGATAGATCGGCTCAATTTGCTTCGG
AAGACGAAGAGCTACGCAAACAAAAAGCGATTCGTCAAATGATCATCGCATCCTTAATCATCATTTTACTTTTAATTGTA
AGCATACTGGTTTACAGAGCGATCAAAAAAGAAATCGCAAGAAGAAGAAGACTCAGAGAAGAAGAACTTGCTGCTCAACA
ACAGATGATGAGAGAAGCCGCCCTTCGAGTTATGGATGAAAGCGGTGCCGAAGTGGAACTTTCTCTGGATGAAAAATATA
GAAGAGAACTTCTTGAAAATGCGATCAACCTCGCCAGAGAAAAACCGGAAGAAGTAGCACAACTTCTTCGCACTTGGCTC
TCTGAAGAGGAAGCAGGTTGA

Upstream 100 bases:

>100_bases
GTGTATCAGAATAAATTTTTCTAAAAAAATTGAAAAGAGATTGTACTCTATTTCCGATATTTGATTATGTCCCGTATTGT
AAATTCGGTGGAGATCCGTT

Downstream 100 bases:

>100_bases
TGAACAACCTGTCTTCTAGACAAAACAGGGCTGGAAGTTTACTCCGGATTTTAGGAGAACATCTTCCTCCTGAAGTTTAC
AAACATCTAGGCCCGGAGGT

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MPEQLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAEVTKKLDSLGYQYGSSD
TSVITVDPEQRQEIVTKLAQENLIPAGVQGWELFNVDKFTETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPED
ELFSSNSSPVKASVILHYIPGVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL
RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPNTPYSELKLVDGYSLKVSSKE
TKEDFKGRGFTPDGPAGTEPNIAPGYKDTDYQKAEYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKE
DGTGYDRKYVPVSEDELRQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILLLIV
SILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKYRRELLENAINLAREKPEEVAQLLRTWL
SEEEAG

Sequences:

>Translated_566_residues
MPEQLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAEVTKKLDSLGYQYGSSD
TSVITVDPEQRQEIVTKLAQENLIPAGVQGWELFNVDKFTETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPED
ELFSSNSSPVKASVILHYIPGVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL
RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPNTPYSELKLVDGYSLKVSSKE
TKEDFKGRGFTPDGPAGTEPNIAPGYKDTDYQKAEYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKE
DGTGYDRKYVPVSEDELRQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILLLIV
SILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKYRRELLENAINLAREKPEEVAQLLRTWL
SEEEAG
>Mature_565_residues
PEQLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSKDFAEVTKKLDSLGYQYGSSDT
SVITVDPEQRQEIVTKLAQENLIPAGVQGWELFNVDKFTETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDE
LFSSNSSPVKASVILHYIPGVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKLR
IGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPNTPYSELKLVDGYSLKVSSKET
KEDFKGRGFTPDGPAGTEPNIAPGYKDTDYQKAEYSKAENINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKED
GTGYDRKYVPVSEDELRQIRKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILLLIVS
ILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKYRRELLENAINLAREKPEEVAQLLRTWLS
EEEAG

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=571, Percent_Identity=24.5183887915937, Blast_Score=127, Evalue=3e-30,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 64610; Mature: 64479

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEQLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
DFAEVTKKLDSLGYQYGSSDTSVITVDPEQRQEIVTKLAQENLIPAGVQGWELFNVDKFT
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHH
ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCCHHHHHHHCC
GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN
HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHCCCCCCCCEEECCCCCC
TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDYQKAEYSKAE
CCHHHEEEECCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
NINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDELRQI
CCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECHHCCCCCCCCCCCCCCCCCCCHHHHHHH
RKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILLLIV
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKYRRELLEN
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
AINLAREKPEEVAQLLRTWLSEEEAG
HHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PEQLQKILNNIREFFTTLDTTKKLILGGVALTVLIAIGILSTISLQKNRMVLFKDLTSK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCH
DFAEVTKKLDSLGYQYGSSDTSVITVDPEQRQEIVTKLAQENLIPAGVQGWELFNVDKFT
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHH
ETQFDKDIKKYRALKGAIEQSLMTLRSVDKAYVNIAFPEDELFSSNSSPVKASVILHYIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCCHHHHHHHCC
GVESLSRKEVKGIVNLVSRAVPKLKPENVSVADADGKIISDFEEDLEKERLELRIVQEKL
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
RIGEEQRIQRLIDMRNTLRWLLGGEDRVDITRFEYNLNWDKESYKDNSVSPVVAIPDNPN
HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHCCCCCCCCEEECCCCCC
TPYSELKLVDGYSLKVSSKETKEDFKGRGFTPDGPAGTEPNIAPGYKDTDYQKAEYSKAE
CCHHHEEEECCCEEEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC
NINNYEFNRRVSEVQKQPWKVEKVNLSVVIDGVWEKKEKEDGTGYDRKYVPVSEDELRQI
CCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECHHCCCCCCCCCCCCCCCCCCCHHHHHHH
RKNLESAVGIDKARGDQISVITIPKDRSAQFASEDEELRKQKAIRQMIIASLIIILLLIV
HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SILVYRAIKKEIARRRRLREEELAAQQQMMREAALRVMDESGAEVELSLDEKYRRELLEN
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
AINLAREKPEEVAQLLRTWLSEEEAG
HHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]