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The map label for this gene is psd [H]

Identifier: 45657246

GI number: 45657246

Start: 1683706

End: 1685847

Strand: Direct

Name: psd [H]

Synonym: LIC11368

Alternate gene names: 45657246

Gene position: 1683706-1685847 (Clockwise)

Preceding gene: 45657245

Following gene: 45657247

Centisome position: 39.36

GC content: 37.96

Gene sequence:

>2142_bases
TTGACGATTCGTCTTCGATTTCCACAGCTTAGATTCTTGTTTCTCGCGATAAAAATTTTTTCGGGCAATATGGACTACAA
AGGTTCCAGGGGAAGATTAGTTCATTCTCAGGCTTTTTTTTCCGGAACCGCTTCCTCTCTTCTTCCCGGTGCAGTGATCG
GTTCGGCTTTGGCTTTGATGATCGGAGGCCCTGGAGTTTTATTTTGGATATGGATTTCCTCGTTTTTTATCATGCCACTT
CGATTTGTTTCATCCACACTTGCGATACGTTTTAGAACTAAAACCGATTCAGGAAGGTATCTTTCCGGTCCTATGTATTT
TATAGAAAGTGCTCTCAAAGCGAGATGGCTCGCTGTAGGTTTTGCAGCCGTAGGACTTCTTACCGTACTCGTAATGGGTG
GTGTGGTTCCGATGTTATATGTAACCCATATCGCAAATCGGGTTTTCGAAATCAATGGAATGACGGTTCCTTTTTTATTA
TCCGTGATTCTCGTATTTATTGTGTTAGGTGGCGTAAGAAGAGTGGGAAAAGTTTCCGCTTATCTTGCTCCTATTGGAAT
CCTTTTGTTTTTTTTGAGTTATTTCTTTTTATTCAAAGGTTCTCTAATGAACTTTAAGGATTTTATATGGTTATCTTTTA
AAGAAGCGTTTCAACCTGGGGCGGCGATTACGGGGGGAGGTTTTGCTCTTGCAAGGGTTTATAGTATGGCTTCTGGGATT
TTTTTTGTTTCTACAGAGACTGGCATTGGTAAAAGCGCGGGTTTGTCGGGAGTTGTAAGAACGGATTATCCCGCCAAGCA
AGGGCTAGTAAGTATGCTCGCTACTTTTTTTGAAGGTTTTATCATATCTACTTTAGTGGTCTACGCACTTTCTTCTTACG
GTGCTTTTAAAATGGAGGAGCAACTTGTATTTTTAAACGCTTTGTTTCAAGGGAATACAAATCCTATAAACGCAGCTTTT
TTCGTTTCTTTTTTATTGTTTGGAGTAGTTTCGATTACTGGTTGGTTTTATACAGGAGAACAAAAAGCTCTTTATGTGTT
CGGAGAAAAGTTTGCGAACTTTTTTAGAATGCTTTTTCTATTTACGATTCTTGCGGTCGCGTATCTTTACGTGAAAAATG
GGGAACAGATTCTTTTCGAAGCTTTTGGATTGGGTTATTCTCTTTCGATTATAACTGCAGTGCCTGTTTTGATTTCTTTG
GTTTTACTCGAGAAAATTGCAAGAACCGAGTTGAAACGTTTTTTAACGGAGAGCGGAGCGAGATACGAAGTATTAAAAGA
TTTTTATATTCTAATATTATCTGTTGTTCCTAAAAATCTACTTTCACGTTTGTTTGGGCTACTTGCTTCTTCCAGACTTC
CACGTTTTATTTTGATTCCGATTTTAAAAGCTTTTGCGAGAGCATATAAGATTAACGTGGACGAAGCCGAATTAGAAATT
CAAGAATACAATTCTCTCAACGAATTCTTTACGAGGGCCTTAAAGGCTGAATCTAGAATCATCGATTCTGCAGACGACGA
AATGGTATCTCCGGTAGACGCAAAAATTACCGGATACGGAGACATCAATCAAAGAATTATCATTCAAGCTAAGGGAGTAG
ACTACAATTTAAAGGAACTTTTGGGTGGGTCAAAATATTTAGAAGATTTTACCAACGGAAAATACATTACTTTTTATTTA
TCTCCTCAAGACTATCATAGAATACATTCTCCTGCATATGGAAAAATATTAGGATATTATTATGAACCTGGAAAGTTGTT
TCCGGTGAATGAACTTGCCGTTTTTGGGATTCGAGGACTTTTTCCAAAAAACGAAAGATTGATTACTTATCTTCAGACAG
AATACGGGAAGGTTGCAGTTATAAAAGTGGGCGCCTCAAACGTTGGACGGATTCGAGTGACTTATGACAATAAGATCGTA
ACCAATACCCTTATCCGAACCGCAAGAACGGTAGAGTATAAGGAAGTTTCGATCATGATTGGTAAGGGAGCGGAACTGGG
TAGATTTGAGATGGGTTCCACTGTAATTTTACTGATGGAAAAGGACACTTTTCAGTTTAATTCTCTTACAGTGAATGAAA
AGATTACTTATGGAACTACGATCGGAAAATTTAAAAAGAAAAAATGTAAACTTCCTAAATAA

Upstream 100 bases:

>100_bases
TTCCTACAGGTAGGTCATGTTGCAATTTCATTTTTTTCAGTTTTTGGATTGGGATTTGCTCAAATTCTTTTTCTATTTTT
TAAGTTTTATCGGGGTCTTT

Downstream 100 bases:

>100_bases
TTAAAAATGATTTCAGAGATTATTTATTCGTTCTTGAAACATCGTTGTATTTAAATTAAAATTAGTTTTAAGAATATAGA
TCCGATCAAATTTTTTTCCA

Product: sodium/alanine symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 713; Mature: 712

Protein sequence:

>713_residues
MTIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALMIGGPGVLFWIWISSFFIMPL
RFVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVGFAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLL
SVILVFIVLGGVRRVGKVSAYLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGI
FFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEEQLVFLNALFQGNTNPINAAF
FVSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFLFTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISL
VLLEKIARTELKRFLTESGARYEVLKDFYILILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEI
QEYNSLNEFFTRALKAESRIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKELLGGSKYLEDFTNGKYITFYL
SPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIV
TNTLIRTARTVEYKEVSIMIGKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK

Sequences:

>Translated_713_residues
MTIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALMIGGPGVLFWIWISSFFIMPL
RFVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVGFAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLL
SVILVFIVLGGVRRVGKVSAYLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGI
FFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEEQLVFLNALFQGNTNPINAAF
FVSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFLFTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISL
VLLEKIARTELKRFLTESGARYEVLKDFYILILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEI
QEYNSLNEFFTRALKAESRIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKELLGGSKYLEDFTNGKYITFYL
SPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIV
TNTLIRTARTVEYKEVSIMIGKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK
>Mature_712_residues
TIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALMIGGPGVLFWIWISSFFIMPLR
FVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVGFAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLLS
VILVFIVLGGVRRVGKVSAYLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGIF
FVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEEQLVFLNALFQGNTNPINAAFF
VSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFLFTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISLV
LLEKIARTELKRFLTESGARYEVLKDFYILILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEIQ
EYNSLNEFFTRALKAESRIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKELLGGSKYLEDFTNGKYITFYLS
PQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGLFPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIVT
NTLIRTARTVEYKEVSIMIGKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=303, Percent_Identity=30.3630363036304, Blast_Score=138, Evalue=2e-32,
Organism=Escherichia coli, GI1790604, Length=260, Percent_Identity=38.0769230769231, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1786188, Length=288, Percent_Identity=24.3055555555556, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71980840, Length=271, Percent_Identity=29.1512915129151, Blast_Score=117, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71980843, Length=280, Percent_Identity=28.5714285714286, Blast_Score=115, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6321609, Length=222, Percent_Identity=31.5315315315315, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=168, Percent_Identity=33.9285714285714, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24649526, Length=327, Percent_Identity=29.9694189602446, Blast_Score=139, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24649528, Length=327, Percent_Identity=29.9694189602446, Blast_Score=139, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24649524, Length=327, Percent_Identity=29.9694189602446, Blast_Score=139, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 79592; Mature: 79461

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALM
CEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCHHHHCCHHHHHHHHHHH
IGGPGVLFWIWISSFFIMPLRFVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVG
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHH
FAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLLSVILVFIVLGGVRRVGKVSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEHHHCCCCCEECCCHHHHHHHHHHHCCE
FFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEE
EEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QLVFLNALFQGNTNPINAAFFVSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFL
HHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHHHHHHHHHH
FTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISLVLLEKIARTELKRFLTESGA
HHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYEVLKDFYILILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
QEYNSLNEFFTRALKAESRIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKEL
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCHHHH
LGGSKYLEDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGL
CCCHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCC
FPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNTLIRTARTVEYKEVSIMI
CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCEEEEEEEEEE
GKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK
ECCCCCCCEECCCEEEEEEECCCEEECEEEECCEEEECCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TIRLRFPQLRFLFLAIKIFSGNMDYKGSRGRLVHSQAFFSGTASSLLPGAVIGSALALM
EEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHCCCHHHHCCHHHHHHHHHHH
IGGPGVLFWIWISSFFIMPLRFVSSTLAIRFRTKTDSGRYLSGPMYFIESALKARWLAVG
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHH
FAAVGLLTVLVMGGVVPMLYVTHIANRVFEINGMTVPFLLSVILVFIVLGGVRRVGKVSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YLAPIGILLFFLSYFFLFKGSLMNFKDFIWLSFKEAFQPGAAITGGGFALARVYSMASGI
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEHHHCCCCCEECCCHHHHHHHHHHHCCE
FFVSTETGIGKSAGLSGVVRTDYPAKQGLVSMLATFFEGFIISTLVVYALSSYGAFKMEE
EEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
QLVFLNALFQGNTNPINAAFFVSFLLFGVVSITGWFYTGEQKALYVFGEKFANFFRMLFL
HHHEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEHHHHHHHHHHHHH
FTILAVAYLYVKNGEQILFEAFGLGYSLSIITAVPVLISLVLLEKIARTELKRFLTESGA
HHHHHHHHHHHCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYEVLKDFYILILSVVPKNLLSRLFGLLASSRLPRFILIPILKAFARAYKINVDEAELEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
QEYNSLNEFFTRALKAESRIIDSADDEMVSPVDAKITGYGDINQRIIIQAKGVDYNLKEL
HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCHHHH
LGGSKYLEDFTNGKYITFYLSPQDYHRIHSPAYGKILGYYYEPGKLFPVNELAVFGIRGL
CCCHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCC
FPKNERLITYLQTEYGKVAVIKVGASNVGRIRVTYDNKIVTNTLIRTARTVEYKEVSIMI
CCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHCEEEEEEEEEE
GKGAELGRFEMGSTVILLMEKDTFQFNSLTVNEKITYGTTIGKFKKKKCKLPK
ECCCCCCCEECCCEEEEEEECCCEEECEEEECCEEEECCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA