Click here to switch to the map view.

The map label for this gene is rsmI [H]

Identifier: 45657035

GI number: 45657035

Start: 1420318

End: 1421043

Strand: Direct

Name: rsmI [H]

Synonym: LIC11151

Alternate gene names: 45657035

Gene position: 1420318-1421043 (Clockwise)

Preceding gene: 45657034

Following gene: 45657038

Centisome position: 33.21

GC content: 35.4

Gene sequence:

>726_bases
ATGAAAATCGAATTTCAAAAAACCCTCGTTTTAGTTTCTGTCTCTTTAGGAAATCCTGGTGATTTGACGGCAAGGGCTAG
AGAATTATTAGAACATTCTGATATACTTATAGGGGAAGAATCTCAAATTACTTCCAAATTGCTTAAGTCGATTTTGGTCT
CTAAACAATTTTTTCTTTGTAATGAACATACTACTCCCGAAGAAATTAGAAATCTTGGGGAAGTGGTGATCAATTCTGGT
TTGACCGTTTTAGTTTCTGATGCAGGAACTCCCGGAATTGAAGATCCTGGAAGGGAACTTGTGCAAGAAGTTTTGAGAAG
AGGTGGAAATGTACGTAGCGCCCCTGGCCCTATTGCGTTTGGAGCTGCTTTGAGTATCTCTGGTTTTAAAATTTCTCCGT
TTACTTTTTGCGGTTTTTTTTCTAGAGATTCTGCCGAGCGGAAAAAAGAACTGATTTATTATCTAAAACCGGGACATACG
ATTGTTTTTTACGAGACTCCTTATCGATATAAATCGGTGCTTCGTGATTTAGATTGGGTTTTTAAAAAAACCAAGGATGA
TAGGGAAGTTTTTTTCTGTTTAGATTTAACTTTGGATTCCGAATTTCAGTTTCGTGGTAAACTGGCAAATCTTTTAAAAA
TTTTAGATACTCTTCCTAAAGGAAACCCTGTGATAGTTCTTTCTCAAAGAAAAGTGAGATCGATTTTTAAAAAGAAAAAA
AATTAA

Upstream 100 bases:

>100_bases
AAAAACTCGTTTGGATACAAGATATTCACTATTTTGTTATATAGTTAATCAATAAAATTGAATTAGTGTAAAATTCGAAA
TTTAAAAGAGTTTGTAAAGT

Downstream 100 bases:

>100_bases
AGCATATTTTACTACTCGGACGTATAAAAATGATACCAATGATAAGCAACCGAGTTTTCTAAAATAACACACTCTAATAA
AATACTTTGAAACCTATATT

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA 2'-O-ribose C1402 methyltransferase; rRNA (cytidine-2'-O-)-methyltransferase RsmI [H]

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MKIEFQKTLVLVSVSLGNPGDLTARARELLEHSDILIGEESQITSKLLKSILVSKQFFLCNEHTTPEEIRNLGEVVINSG
LTVLVSDAGTPGIEDPGRELVQEVLRRGGNVRSAPGPIAFGAALSISGFKISPFTFCGFFSRDSAERKKELIYYLKPGHT
IVFYETPYRYKSVLRDLDWVFKKTKDDREVFFCLDLTLDSEFQFRGKLANLLKILDTLPKGNPVIVLSQRKVRSIFKKKK
N

Sequences:

>Translated_241_residues
MKIEFQKTLVLVSVSLGNPGDLTARARELLEHSDILIGEESQITSKLLKSILVSKQFFLCNEHTTPEEIRNLGEVVINSG
LTVLVSDAGTPGIEDPGRELVQEVLRRGGNVRSAPGPIAFGAALSISGFKISPFTFCGFFSRDSAERKKELIYYLKPGHT
IVFYETPYRYKSVLRDLDWVFKKTKDDREVFFCLDLTLDSEFQFRGKLANLLKILDTLPKGNPVIVLSQRKVRSIFKKKK
N
>Mature_241_residues
MKIEFQKTLVLVSVSLGNPGDLTARARELLEHSDILIGEESQITSKLLKSILVSKQFFLCNEHTTPEEIRNLGEVVINSG
LTVLVSDAGTPGIEDPGRELVQEVLRRGGNVRSAPGPIAFGAALSISGFKISPFTFCGFFSRDSAERKKELIYYLKPGHT
IVFYETPYRYKSVLRDLDWVFKKTKDDREVFFCLDLTLDSEFQFRGKLANLLKILDTLPKGNPVIVLSQRKVRSIFKKKK
N

Specific function: Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA [H]

COG id: COG0313

COG function: function code R; Predicted methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmI family [H]

Homologues:

Organism=Escherichia coli, GI1789535, Length=231, Percent_Identity=29.4372294372294, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000878
- InterPro:   IPR014777
- InterPro:   IPR008189 [H]

Pfam domain/function: PF00590 TP_methylase [H]

EC number: NA

Molecular weight: Translated: 27156; Mature: 27156

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEFQKTLVLVSVSLGNPGDLTARARELLEHSDILIGEESQITSKLLKSILVSKQFFLC
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHEEE
NEHTTPEEIRNLGEVVINSGLTVLVSDAGTPGIEDPGRELVQEVLRRGGNVRSAPGPIAF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
GAALSISGFKISPFTFCGFFSRDSAERKKELIYYLKPGHTIVFYETPYRYKSVLRDLDWV
CCEEEECCEEECCHHEECCCCCCHHHHHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHH
FKKTKDDREVFFCLDLTLDSEFQFRGKLANLLKILDTLPKGNPVIVLSQRKVRSIFKKKK
HHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
N
C
>Mature Secondary Structure
MKIEFQKTLVLVSVSLGNPGDLTARARELLEHSDILIGEESQITSKLLKSILVSKQFFLC
CCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHEEE
NEHTTPEEIRNLGEVVINSGLTVLVSDAGTPGIEDPGRELVQEVLRRGGNVRSAPGPIAF
CCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
GAALSISGFKISPFTFCGFFSRDSAERKKELIYYLKPGHTIVFYETPYRYKSVLRDLDWV
CCEEEECCEEECCHHEECCCCCCHHHHHHHEEEEECCCCEEEEEECCHHHHHHHHHHHHH
FKKTKDDREVFFCLDLTLDSEFQFRGKLANLLKILDTLPKGNPVIVLSQRKVRSIFKKKK
HHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA