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The map label for this gene is ynfJ [C]

Identifier: 45657008

GI number: 45657008

Start: 1387819

End: 1389069

Strand: Direct

Name: ynfJ [C]

Synonym: LIC11124

Alternate gene names: 45657008

Gene position: 1387819-1389069 (Clockwise)

Preceding gene: 45657007

Following gene: 304570490

Centisome position: 32.45

GC content: 39.81

Gene sequence:

>1251_bases
ATGAATAGGATTTCCGAGTTGCTTCGATCCCCCGTACTTATACTTTCCAGAAAGAACCCTTTTATGCTTTCTAGACTTAC
GTTTTTTTACGTAATCTTAGGAATTGTCGGAGGACTTTTCTCGGCGGTGTTTTGGATGTTTTTGGAATATCTAATACATT
TAAGTTCAACAATTCCGGAAATTTTAACCGTTCCATACATGGCAGTAGCTGGGTTGTTCATAGGATTGGTCATCCATTTT
TTAGGTGAACCGGGAGAGATTTCATTAGTAATTGATAATATACGATTTCGAGGTGGAAAATTAGAAACGAATCAAAATCC
TTCTATGGCTCTTTCTTCTATTTTGAGTATTTCCGCAGGAGGAAGTGCAGGGCCCGAGGCGCCGTTGGTGCAGATAACCG
GTTCCTTTGGAAATTGGTTTGCAGAGAAATTAGGGCTTACGGGAGAAGAATACAGATCTATGACGATCGCGGGAATGGCC
GCTGGTTTTACATCCTTATTTGGATCTCCATTGGGAGGAGCGTTATTTGCACTTGAGGTATTACAGCATAGACACGTCGT
GGAATATTATAAGGCTCTACTTCCAGCATTCTTATCCAGTACTTCTGCATTTTTTGTTTTTCTTTGGATGACTCACGCAG
GTTTACAACCTACTTGGCAGTTTCCTCAGTATGTTCCAGGAGACATTCAAGATTTCTTATATGCAATATTGTTGGGAGGA
GTTGGAGCAGGACTAGGCTGGATGTTTCATGGATTATTCTTAGTCAATCGTTGGTTTTATTCAAAAATTCCGGGACAAAT
TTATTGGAAAACTTTGTTAGGTGGACTTGTGTTAGGACTGATCGCATGGCAACTTCCGCTTACTCGTTTTTTTGGGCATG
ATCAATTGAATCGAATTGTAGAGGGAAGATTTACTCCAACCTTTTTGGTTGTTTTGATTTTCTGGAAAACCTTTGCAATT
AGCACCACTGTGGCGAGCGGTTGGAGAGGAGGAGTGATTATACCTCTGTTTTTTTTAGGGGCCTGTGTAGGAAAACTTTT
GTTCGGCTTTTTTCCGAGTGAGAATGAATCTTTTTTGATGATCTGTTTAATGGCGGCTGTAAATTCTTCCGTGACCAAAA
CACCAATCTCTACTACAATTTTATTATCTGAACTGACTGGGCTTTATCGTTTTACTCCCGTGTTGATTGCAAGTTTGAGT
GGATATTTCTTATCTCCTAAAGAACCATTTATTTCCACTCAAGGAAAATAA

Upstream 100 bases:

>100_bases
GCAAAAAAAATCATGGAAAGTTCTGGCGAAGTCGTTCACGAAATAGGAGAGATCGTATCCGGAAATAAGGAAGAAGTCCA
GTTCGTCTAATGTTACTTTT

Downstream 100 bases:

>100_bases
AACTAGAACCCTTTAAAAATTCAATAGTTTCTATAAACGTTGTTTTGTAAGAACTGAAATTCAATTTTTGCGAACGGACG
TTTGATTTTCTGTCTTAAGT

Product: chloride channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MNRISELLRSPVLILSRKNPFMLSRLTFFYVILGIVGGLFSAVFWMFLEYLIHLSSTIPEILTVPYMAVAGLFIGLVIHF
LGEPGEISLVIDNIRFRGGKLETNQNPSMALSSILSISAGGSAGPEAPLVQITGSFGNWFAEKLGLTGEEYRSMTIAGMA
AGFTSLFGSPLGGALFALEVLQHRHVVEYYKALLPAFLSSTSAFFVFLWMTHAGLQPTWQFPQYVPGDIQDFLYAILLGG
VGAGLGWMFHGLFLVNRWFYSKIPGQIYWKTLLGGLVLGLIAWQLPLTRFFGHDQLNRIVEGRFTPTFLVVLIFWKTFAI
STTVASGWRGGVIIPLFFLGACVGKLLFGFFPSENESFLMICLMAAVNSSVTKTPISTTILLSELTGLYRFTPVLIASLS
GYFLSPKEPFISTQGK

Sequences:

>Translated_416_residues
MNRISELLRSPVLILSRKNPFMLSRLTFFYVILGIVGGLFSAVFWMFLEYLIHLSSTIPEILTVPYMAVAGLFIGLVIHF
LGEPGEISLVIDNIRFRGGKLETNQNPSMALSSILSISAGGSAGPEAPLVQITGSFGNWFAEKLGLTGEEYRSMTIAGMA
AGFTSLFGSPLGGALFALEVLQHRHVVEYYKALLPAFLSSTSAFFVFLWMTHAGLQPTWQFPQYVPGDIQDFLYAILLGG
VGAGLGWMFHGLFLVNRWFYSKIPGQIYWKTLLGGLVLGLIAWQLPLTRFFGHDQLNRIVEGRFTPTFLVVLIFWKTFAI
STTVASGWRGGVIIPLFFLGACVGKLLFGFFPSENESFLMICLMAAVNSSVTKTPISTTILLSELTGLYRFTPVLIASLS
GYFLSPKEPFISTQGK
>Mature_416_residues
MNRISELLRSPVLILSRKNPFMLSRLTFFYVILGIVGGLFSAVFWMFLEYLIHLSSTIPEILTVPYMAVAGLFIGLVIHF
LGEPGEISLVIDNIRFRGGKLETNQNPSMALSSILSISAGGSAGPEAPLVQITGSFGNWFAEKLGLTGEEYRSMTIAGMA
AGFTSLFGSPLGGALFALEVLQHRHVVEYYKALLPAFLSSTSAFFVFLWMTHAGLQPTWQFPQYVPGDIQDFLYAILLGG
VGAGLGWMFHGLFLVNRWFYSKIPGQIYWKTLLGGLVLGLIAWQLPLTRFFGHDQLNRIVEGRFTPTFLVVLIFWKTFAI
STTVASGWRGGVIIPLFFLGACVGKLLFGFFPSENESFLMICLMAAVNSSVTKTPISTTILLSELTGLYRFTPVLIASLS
GYFLSPKEPFISTQGK

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 45815; Mature: 45815

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRISELLRSPVLILSRKNPFMLSRLTFFYVILGIVGGLFSAVFWMFLEYLIHLSSTIPE
CCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTVPYMAVAGLFIGLVIHFLGEPGEISLVIDNIRFRGGKLETNQNPSMALSSILSISAG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCHHHHHHHHHHHCCC
GSAGPEAPLVQITGSFGNWFAEKLGLTGEEYRSMTIAGMAAGFTSLFGSPLGGALFALEV
CCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LQHRHVVEYYKALLPAFLSSTSAFFVFLWMTHAGLQPTWQFPQYVPGDIQDFLYAILLGG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VGAGLGWMFHGLFLVNRWFYSKIPGQIYWKTLLGGLVLGLIAWQLPLTRFFGHDQLNRIV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
EGRFTPTFLVVLIFWKTFAISTTVASGWRGGVIIPLFFLGACVGKLLFGFFPSENESFLM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ICLMAAVNSSVTKTPISTTILLSELTGLYRFTPVLIASLSGYFLSPKEPFISTQGK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNRISELLRSPVLILSRKNPFMLSRLTFFYVILGIVGGLFSAVFWMFLEYLIHLSSTIPE
CCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILTVPYMAVAGLFIGLVIHFLGEPGEISLVIDNIRFRGGKLETNQNPSMALSSILSISAG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCHHHHHHHHHHHCCC
GSAGPEAPLVQITGSFGNWFAEKLGLTGEEYRSMTIAGMAAGFTSLFGSPLGGALFALEV
CCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LQHRHVVEYYKALLPAFLSSTSAFFVFLWMTHAGLQPTWQFPQYVPGDIQDFLYAILLGG
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VGAGLGWMFHGLFLVNRWFYSKIPGQIYWKTLLGGLVLGLIAWQLPLTRFFGHDQLNRIV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
EGRFTPTFLVVLIFWKTFAISTTVASGWRGGVIIPLFFLGACVGKLLFGFFPSENESFLM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ICLMAAVNSSVTKTPISTTILLSELTGLYRFTPVLIASLSGYFLSPKEPFISTQGK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]