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The map label for this gene is 45656916

Identifier: 45656916

GI number: 45656916

Start: 1271749

End: 1272663

Strand: Direct

Name: 45656916

Synonym: LIC11032

Alternate gene names: NA

Gene position: 1271749-1272663 (Clockwise)

Preceding gene: 45656915

Following gene: 45656917

Centisome position: 29.73

GC content: 37.05

Gene sequence:

>915_bases
ATGAATCGCTCGATTGGATCTCAATCTTTTAGAATTGCAAAATCAATATTAAACAAAGGGGTTCAAGTAATTGTCCTGAA
CCCAGGCAACCTGGCCACAATCTATCAATCTTTAAAAAAAACAGATAAAGAAGACTCTCTCAAGATTGCGAGACTCATAC
AACGTTTTCCAATAGAAGAATTACCGGTCGTTCCGATTCCAAACGATGAAGAGGAGGACAATAGAAGACTATGCACGGAA
CAAGAGAACTGGACAAGGCAACTAACGCAAAGTAAGAATCGGCTTCATAGTTTATTCACCCAAGCCGGTTTGACTCAGAT
CACCAAAAAACACTTACGAACAAAAGCAAATAGAGAAATCTCTGTAGCCTTACTTCCAAGTCGATACCAAAAAGAAGCGG
AAAGAATATTAAAAGTTTTAGATTTAGTGGAACAAAATCTAAAACTCATAGAAAAAGAAATTCAAGAAGCTCTCAAAAAA
AACAAAGCCTATGTTCAGACGATCATGTCTATGCCTGGAATTGGAATGATTACTTCTTTGGCGATTATGAGTTACATGGG
TGATTGTAAAAGATTTTCTTCAGCTAAACAAGCGGCTTACTACGCTGGTTTGGTTCCGAGAGTTGACATTTCAGGAGACA
CGGTTCGATACGGAAGAATCATAAATCGAGGTTGTCATTCAATTCGAAGGGTGATTGTTCAAGCGGCTTGGAGTCTGGTT
CGTTGTCAACACGGTGGTAAGATAAAAGAGTTCTATCAAAGGTTATACCTTAAAAAAGGTGCTAAAAAATCGATCATCGC
TACTTCACGTAAAATGATCGAAGTTCTTTACGTAATGATTCGAACCAGAAAACTTTTCGATTCTATGCCTGAAAATATAT
TAAATCGAAAATTAACTCAATATGGTCTTATGTAA

Upstream 100 bases:

>100_bases
TTACAATGGTTGACCTTGAATGACATTGTAGGTCTGGATTTCTTAGCTTCGCTAAGAGCCAACAGCAACGCTTCGCTGCT
TTTTGGCAATCTCGCTCACC

Downstream 100 bases:

>100_bases
AAAAAATAACGGGAGGGCTTGACACAAGAAACATAGGAGAGAGCGTTGTGTTGAGTTCGTCAACGCGATTCATAGAGAGC
CGTTGTGTTGAGTTTTCCCT

Product: transposase, ISlin1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNRSIGSQSFRIAKSILNKGVQVIVLNPGNLATIYQSLKKTDKEDSLKIARLIQRFPIEELPVVPIPNDEEEDNRRLCTE
QENWTRQLTQSKNRLHSLFTQAGLTQITKKHLRTKANREISVALLPSRYQKEAERILKVLDLVEQNLKLIEKEIQEALKK
NKAYVQTIMSMPGIGMITSLAIMSYMGDCKRFSSAKQAAYYAGLVPRVDISGDTVRYGRIINRGCHSIRRVIVQAAWSLV
RCQHGGKIKEFYQRLYLKKGAKKSIIATSRKMIEVLYVMIRTRKLFDSMPENILNRKLTQYGLM

Sequences:

>Translated_304_residues
MNRSIGSQSFRIAKSILNKGVQVIVLNPGNLATIYQSLKKTDKEDSLKIARLIQRFPIEELPVVPIPNDEEEDNRRLCTE
QENWTRQLTQSKNRLHSLFTQAGLTQITKKHLRTKANREISVALLPSRYQKEAERILKVLDLVEQNLKLIEKEIQEALKK
NKAYVQTIMSMPGIGMITSLAIMSYMGDCKRFSSAKQAAYYAGLVPRVDISGDTVRYGRIINRGCHSIRRVIVQAAWSLV
RCQHGGKIKEFYQRLYLKKGAKKSIIATSRKMIEVLYVMIRTRKLFDSMPENILNRKLTQYGLM
>Mature_304_residues
MNRSIGSQSFRIAKSILNKGVQVIVLNPGNLATIYQSLKKTDKEDSLKIARLIQRFPIEELPVVPIPNDEEEDNRRLCTE
QENWTRQLTQSKNRLHSLFTQAGLTQITKKHLRTKANREISVALLPSRYQKEAERILKVLDLVEQNLKLIEKEIQEALKK
NKAYVQTIMSMPGIGMITSLAIMSYMGDCKRFSSAKQAAYYAGLVPRVDISGDTVRYGRIINRGCHSIRRVIVQAAWSLV
RCQHGGKIKEFYQRLYLKKGAKKSIIATSRKMIEVLYVMIRTRKLFDSMPENILNRKLTQYGLM

Specific function: Unknown

COG id: COG3547

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 20 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003346
- InterPro:   IPR002525 [H]

Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]

EC number: NA

Molecular weight: Translated: 34929; Mature: 34929

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCC
>Mature Secondary Structure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HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]