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The map label for this gene is 45656355

Identifier: 45656355

GI number: 45656355

Start: 519798

End: 520592

Strand: Reverse

Name: 45656355

Synonym: LIC10457

Alternate gene names: NA

Gene position: 520592-519798 (Counterclockwise)

Preceding gene: 45656356

Following gene: 45656354

Centisome position: 12.17

GC content: 33.96

Gene sequence:

>795_bases
ATGACCAAATCGAGTTACGGTAATCCTAGATTTTTCGATTTCGTATATGACGAATTTTTAACCGGCGCAGACGGTTCTAT
CTTTCCGTATCAAGAAGGTGATCTTTTCAATTCTCTAACAAGAGAAAATATATTAGAACTATTAGAAATCACCGGAATTC
TTCCTGAAATCCGAAAGAAAGGTTATACCAAAGTTCAACTTGAAATTTCAGGTATGGGAGAAGATTTTCAAAGACTCGTT
TTAATTTCCGATAAGGAAATTTTATTACATCTTCGTTTAAGCATTCAAGAATATAGATTAGAAATCAACGACTACTTCTT
CAAAGAGAAGTATCTGATCATAAATTGGTTACAAACACGTCATCCGAAATCTCAAACTATGGATAAAAGTAGATTGTATC
CCGGACAAGACGTCCCTGGCCTTGGAATTTTTCACCAGATTTCAGACTTTATAGGTTTTTTAATTTTATCTCTCAGATTA
AACGGCTCAGTAATTCGACCTGAATACTTTCACGATGCAGTACTCTTTTCTAAAAAATTTAGATTTTTAACTCCCGAATC
GCAGGCCCTATTTATCGCGCTCAGAAGGGATTTCAAAAATCAATCCATTCGCGGAATTTCCACCGATCTTCATTCTGGTA
AAATCCAAAATCATAAAGACATTCTAAAATGGAAGGCCGTCGAAATGATTCTATTTTTAGAAAAGACTTTAAACTCCTTT
GTATTCAATAAAAAATTCGACAAGAAAGTAGCCAAAATCTTAGATACGATCAAACTCAACATCATTGAATCTTAG

Upstream 100 bases:

>100_bases
ACTTAGGGATTTCCTTGAAAAAAAAAATAATCAAAGATTTTGATGGAATCGTGAAACAAAAAGACTTCATTTTAAATCTC
TTTGACTTTATTATACTATC

Downstream 100 bases:

>100_bases
TTAGGCGAAAGTTTTGAATTTTGCTTTTAACAAACAAAAAATAAATTGATGGCAAAAATTAATATTCGGGATGTTAGGTG
ATGTTATCACAACTTGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Histone Deacetylase Family Protein

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTKSSYGNPRFFDFVYDEFLTGADGSIFPYQEGDLFNSLTRENILELLEITGILPEIRKKGYTKVQLEISGMGEDFQRLV
LISDKEILLHLRLSIQEYRLEINDYFFKEKYLIINWLQTRHPKSQTMDKSRLYPGQDVPGLGIFHQISDFIGFLILSLRL
NGSVIRPEYFHDAVLFSKKFRFLTPESQALFIALRRDFKNQSIRGISTDLHSGKIQNHKDILKWKAVEMILFLEKTLNSF
VFNKKFDKKVAKILDTIKLNIIES

Sequences:

>Translated_264_residues
MTKSSYGNPRFFDFVYDEFLTGADGSIFPYQEGDLFNSLTRENILELLEITGILPEIRKKGYTKVQLEISGMGEDFQRLV
LISDKEILLHLRLSIQEYRLEINDYFFKEKYLIINWLQTRHPKSQTMDKSRLYPGQDVPGLGIFHQISDFIGFLILSLRL
NGSVIRPEYFHDAVLFSKKFRFLTPESQALFIALRRDFKNQSIRGISTDLHSGKIQNHKDILKWKAVEMILFLEKTLNSF
VFNKKFDKKVAKILDTIKLNIIES
>Mature_263_residues
TKSSYGNPRFFDFVYDEFLTGADGSIFPYQEGDLFNSLTRENILELLEITGILPEIRKKGYTKVQLEISGMGEDFQRLVL
ISDKEILLHLRLSIQEYRLEINDYFFKEKYLIINWLQTRHPKSQTMDKSRLYPGQDVPGLGIFHQISDFIGFLILSLRLN
GSVIRPEYFHDAVLFSKKFRFLTPESQALFIALRRDFKNQSIRGISTDLHSGKIQNHKDILKWKAVEMILFLEKTLNSFV
FNKKFDKKVAKILDTIKLNIIES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30901; Mature: 30770

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSSYGNPRFFDFVYDEFLTGADGSIFPYQEGDLFNSLTRENILELLEITGILPEIRKK
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
GYTKVQLEISGMGEDFQRLVLISDKEILLHLRLSIQEYRLEINDYFFKEKYLIINWLQTR
CCEEEEEEEECCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCEEEEEEHHCC
HPKSQTMDKSRLYPGQDVPGLGIFHQISDFIGFLILSLRLNGSVIRPEYFHDAVLFSKKF
CCCHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHH
RFLTPESQALFIALRRDFKNQSIRGISTDLHSGKIQNHKDILKWKAVEMILFLEKTLNSF
EEECCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VFNKKFDKKVAKILDTIKLNIIES
HHCCHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
TKSSYGNPRFFDFVYDEFLTGADGSIFPYQEGDLFNSLTRENILELLEITGILPEIRKK
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHC
GYTKVQLEISGMGEDFQRLVLISDKEILLHLRLSIQEYRLEINDYFFKEKYLIINWLQTR
CCEEEEEEEECCCCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCEEEEEEHHCC
HPKSQTMDKSRLYPGQDVPGLGIFHQISDFIGFLILSLRLNGSVIRPEYFHDAVLFSKKF
CCCHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHH
RFLTPESQALFIALRRDFKNQSIRGISTDLHSGKIQNHKDILKWKAVEMILFLEKTLNSF
EEECCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VFNKKFDKKVAKILDTIKLNIIES
HHCCHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA