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The map label for this gene is rpl15p [H]

Identifier: 45358984

GI number: 45358984

Start: 1392583

End: 1393014

Strand: Direct

Name: rpl15p [H]

Synonym: MMP1421

Alternate gene names: 45358984

Gene position: 1392583-1393014 (Clockwise)

Preceding gene: 45358983

Following gene: 45358985

Centisome position: 83.83

GC content: 37.96

Gene sequence:

>432_bases
ATGATTAGAAAAAGCAAAAAAATCACGAAAAAAAGAGGCTCCAGAACCTGCGGATATGGAGAAGCTAAAAAACACAGAGG
CGCTGGCCACAGAGGTGGTAGGGGTAACGCTGGTCACCAAAAACATAAATGGTTGTCCGTCTGTAAATTCAATCCTGATT
ACTTTGGTAAATACGGATTCAACAGAAACCCTTGCCTTATAAAACAGTTAGAAACTATCAACATTGGAGAATTAGAAGAA
TACATCTTAAAATACAAAGATGCATTCCAAGTAGAAGAAGGTAAAGTTGTAGTTAACGCTACAGAAATCGGATTCGAAAA
AGTTCTCGGAAAAGGAAGAATCTCAACCGCAATGGTTGTAAAAGCAGTTGAATTCTCTGAAGGAGCTAAAGAAAAAATTG
AGGCTGCCGGTGGAGAATTTGTTGAATTGTAA

Upstream 100 bases:

>100_bases
CAGGAGTTAAAAAAGGATTCTCAATTGGTGGTGCCTTAGGTTACAGATCTGGTAAAATCAACGATTTATTGAACAAAATG
ATGTAATTTAAGGTGATTTA

Downstream 100 bases:

>100_bases
TTCAATTAAGAATCACTTATTCCATTTAATTCTGCTTTTTCTTATTTTTGATAGTGGATACTATGAAGATCCCAATCATT
TAAATACTCATTTTTTAATA

Product: 50S ribosomal protein L15P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MIRKSKKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGFNRNPCLIKQLETINIGELEE
YILKYKDAFQVEEGKVVVNATEIGFEKVLGKGRISTAMVVKAVEFSEGAKEKIEAAGGEFVEL

Sequences:

>Translated_143_residues
MIRKSKKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGFNRNPCLIKQLETINIGELEE
YILKYKDAFQVEEGKVVVNATEIGFEKVLGKGRISTAMVVKAVEFSEGAKEKIEAAGGEFVEL
>Mature_143_residues
MIRKSKKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGFNRNPCLIKQLETINIGELEE
YILKYKDAFQVEEGKVVVNATEIGFEKVLGKGRISTAMVVKAVEFSEGAKEKIEAAGGEFVEL

Specific function: Binds to the 23S rRNA [H]

COG id: COG0200

COG function: function code J; Ribosomal protein L15

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L15P family [H]

Homologues:

Organism=Homo sapiens, GI4506625, Length=147, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17509867, Length=149, Percent_Identity=36.241610738255, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6321335, Length=154, Percent_Identity=37.6623376623377, Blast_Score=68, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17136880, Length=143, Percent_Identity=38.4615384615385, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001196
- InterPro:   IPR021131 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 15952; Mature: 15952

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS00475 RIBOSOMAL_L15

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKSKKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGF
CCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCCC
NRNPCLIKQLETINIGELEEYILKYKDAFQVEEGKVVVNATEIGFEKVLGKGRISTAMVV
CCCCCEEEEECCCCCHHHHHHHHHHHHHCEECCCEEEEEEHHHHHHHHHCCCCCCHHHHH
KAVEFSEGAKEKIEAAGGEFVEL
HHHHCCCCHHHHHHHCCCCEECC
>Mature Secondary Structure
MIRKSKKITKKRGSRTCGYGEAKKHRGAGHRGGRGNAGHQKHKWLSVCKFNPDYFGKYGF
CCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCCC
NRNPCLIKQLETINIGELEEYILKYKDAFQVEEGKVVVNATEIGFEKVLGKGRISTAMVV
CCCCCEEEEECCCCCHHHHHHHHHHHHHCEECCCEEEEEEHHHHHHHHHCCCCCCHHHHH
KAVEFSEGAKEKIEAAGGEFVEL
HHHHCCCCHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA