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The map label for this gene is rps4e [H]

Identifier: 45358974

GI number: 45358974

Start: 1387426

End: 1388160

Strand: Direct

Name: rps4e [H]

Synonym: MMP1411

Alternate gene names: 45358974

Gene position: 1387426-1388160 (Clockwise)

Preceding gene: 45358973

Following gene: 45358975

Centisome position: 83.52

GC content: 35.37

Gene sequence:

>735_bases
ATGGCAATTAAAGGACCTAGAAAACATCTTAAAAGATTGGCTGCTCCAGCAAATTGGCAACTTCCTAGAAAAGTGAAAAC
ATTTACGGTAAGACCATCACCTGGACCACATTCAATGGATAAATCCTTGCCATTATTGTTAGTTGTAAGAGATGTATTAA
AATATGCTGACAATGCAAGAGAAGCTAAAAAAATTATCCAAACAGGAAAAATTTTAATCGATGGATTAAAAAGAAAAGAG
TACAAACACCCTGCTGGATTAATGGATGTTTTATCAATCCCTGAAATGGATGAAACTTACCTTGTATTATTTGACGAAAG
CGGAAGAATCAGCTTGAAAAAAACTGATAAAACCGATGTAAAATTGTGCAAAATCGTAAACAAAACTGTCGTTAAAGGCG
GAAACATTCAATTAAACCTTCACGATGGTAGAAACCAGATTGTAAAAGTTTCAGATGCTGCAAAAGCTGAAGAAGATGTT
TACAAAACCGGAGACAGCGTTTTAATTTCAATTCCAGAACAGTCAATTGCTGGACATGTTGCATTTGGCGAAGGAAAATT
AGCATACATCACTGGCGGTAAACACGTTGGAGAATTTGCTAAAATCGTTGAAGTTGAAAACAGAGCATTGTACTCAGATA
TTGTAACTTTAGAAAACAAAGATGGCGAGAAATTTAAAACCGTTAAGCCTTACGTATTCATCGTAGGTCAAGACGAGCCA
GTAATTTCGATGTAA

Upstream 100 bases:

>100_bases
AAACAGCATATCCAATTCATCCATCAAATGTTATGATTACCAAATTGGACGAATCAGACGAAAAGAGATTTAAAAATTCA
AGTAACTAAGAGGTGTGAGC

Downstream 100 bases:

>100_bases
TGCCCATAAAATTAGAGGAGGACGAAACATGTCATTCCAAGAAGTTTGGGAAAAAGAACCTATGAAAAAACCAAGAATCC
AAAAAGTCACCGTAAACTTC

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAIKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKE
YKHPAGLMDVLSIPEMDETYLVLFDESGRISLKKTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDV
YKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQDEP
VISM

Sequences:

>Translated_244_residues
MAIKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKE
YKHPAGLMDVLSIPEMDETYLVLFDESGRISLKKTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDV
YKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQDEP
VISM
>Mature_243_residues
AIKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEY
KHPAGLMDVLSIPEMDETYLVLFDESGRISLKKTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVY
KTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQDEPV
ISM

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4506725, Length=244, Percent_Identity=33.1967213114754, Blast_Score=142, Evalue=3e-34,
Organism=Homo sapiens, GI4506727, Length=244, Percent_Identity=34.0163934426229, Blast_Score=141, Evalue=6e-34,
Organism=Homo sapiens, GI88703062, Length=244, Percent_Identity=31.1475409836066, Blast_Score=131, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17543386, Length=237, Percent_Identity=38.3966244725738, Blast_Score=160, Evalue=5e-40,
Organism=Saccharomyces cerevisiae, GI6322605, Length=244, Percent_Identity=34.4262295081967, Blast_Score=142, Evalue=7e-35,
Organism=Saccharomyces cerevisiae, GI6321997, Length=244, Percent_Identity=34.4262295081967, Blast_Score=142, Evalue=7e-35,
Organism=Drosophila melanogaster, GI24663672, Length=244, Percent_Identity=34.8360655737705, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24663668, Length=244, Percent_Identity=34.8360655737705, Blast_Score=145, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR018199
- InterPro:   IPR002942
- ProDom:   PD002667 [H]

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27071; Mature: 26940

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50889 S4 ; PS00528 RIBOSOMAL_S4E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAR
CCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
EAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKKTDKTDV
HHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHH
KLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHV
HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCHHCHHHHHHHCCCEEEEECCCHHHCEEE
AFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQDEP
EECCCEEEEEECCCHHHHHHHHHHHHCHHHHHHEEEEECCCCCCEEEECCEEEEEECCCC
VISM
CCCC
>Mature Secondary Structure 
AIKGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAR
CCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
EAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKKTDKTDV
HHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCHH
KLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHV
HHHHHHHHHHCCCCCEEEEEECCCCEEEEECCHHCHHHHHHHCCCEEEEECCCHHHCEEE
AFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQDEP
EECCCEEEEEECCCHHHHHHHHHHHHCHHHHHHEEEEECCCCCCEEEECCEEEEEECCCC
VISM
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA