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The map label for this gene is rpl13p

Identifier: 45358887

GI number: 45358887

Start: 1308338

End: 1308751

Strand: Direct

Name: rpl13p

Synonym: MMP1324

Alternate gene names: 45358887

Gene position: 1308338-1308751 (Clockwise)

Preceding gene: 45358886

Following gene: 45358888

Centisome position: 78.76

GC content: 35.27

Gene sequence:

>414_bases
ATGGTTGTTGTAAACGCTGAAAATGCAGTTGTTGGAAGATTAGCTTCATACGTTGCTAAACTTGCACTAAGCGGTGAAGA
AATAACCGTTGTAAACGCTGAAAAAGCAATTATGACTGGAAACAAAGAATACATATTCCAAAAATATGTACAACTCAGAA
CAAGAAAAAGTATTTCAAACCCTAAAAAAATGGGTCCAAAATACCCTAGAAGACCTGACGACATCGTAAGAAGAGTTATC
AGAGGAATGCTTCCCTACAAAAAACCTAGAGGAGTAGAAGCTTTCAAAAAAATTAAAATTGAAGTTGGAGTTCCTGAAGG
GGTTTCTATCGATATTAACTTAGGTAGCGCACCAAATACAATCAAATATGTAACCGTTGGAGAATTAAGCCAATTCTTAG
GTGCTAAATTCTAA

Upstream 100 bases:

>100_bases
CTGTAGGCGGAAAATGTTTAACAATCGAAGAACTTATTGCAGAAAACCCTAAAGGTTCTAAAGTAACCATTATGGCGTAA
TTAAACACGAAGGTGGAATT

Downstream 100 bases:

>100_bases
TTGAGGTGAAAGTGTGAAAGTAGTCCACACAGTAGGTAAAAGAAGAACCGCAATTGCAAGAGCTACTGCAAAAGAAGGAA
GCGGTAAAATCAGAATTAAC

Product: 50S ribosomal protein L13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:

>137_residues
MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVI
RGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTIKYVTVGELSQFLGAKF

Sequences:

>Translated_137_residues
MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVI
RGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTIKYVTVGELSQFLGAKF
>Mature_137_residues
MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVI
RGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTIKYVTVGELSQFLGAKF

Specific function: This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly

COG id: COG0102

COG function: function code J; Ribosomal protein L13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L13P family

Homologues:

Organism=Homo sapiens, GI6912634, Length=145, Percent_Identity=30.3448275862069, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17554234, Length=144, Percent_Identity=34.0277777777778, Blast_Score=79, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6324260, Length=148, Percent_Identity=32.4324324324324, Blast_Score=68, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6322058, Length=148, Percent_Identity=31.7567567567568, Blast_Score=65, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21357053, Length=144, Percent_Identity=29.8611111111111, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL13_METMP (Q6LXM6)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988444.1
- HSSP:   O59300
- ProteinModelPortal:   Q6LXM6
- SMR:   Q6LXM6
- GeneID:   2761512
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1324
- NMPDR:   fig|267377.1.peg.1324
- HOGENOM:   HBG745735
- OMA:   PNTIKYV
- ProtClustDB:   PRK06394
- BioCyc:   MMAR267377:MMP1324-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_01366_A
- InterPro:   IPR005822
- InterPro:   IPR005755
- Gene3D:   G3DSA:3.90.1180.10
- PANTHER:   PTHR11545
- PANTHER:   PTHR11545:SF3
- PIRSF:   PIRSF002181
- TIGRFAMs:   TIGR01077

Pfam domain/function: PF00572 Ribosomal_L13; SSF52161 Ribosomal_L13

EC number: NA

Molecular weight: Translated: 15195; Mature: 15195

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: PS00783 RIBOSOMAL_L13

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISN
CEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHEEECCHHHHHHHHHHHHHHHHCCC
PKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNT
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCCCCEEEEECCCCCCE
IKYVTVGELSQFLGAKF
EEEEEHHHHHHHHCCCC
>Mature Secondary Structure
MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISN
CEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHEEECCHHHHHHHHHHHHHHHHCCC
PKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNT
HHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHEEEEEECCCCCCEEEEECCCCCCE
IKYVTVGELSQFLGAKF
EEEEEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA