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The map label for this gene is rps13p

Identifier: 45358882

GI number: 45358882

Start: 1305905

End: 1306354

Strand: Direct

Name: rps13p

Synonym: MMP1319

Alternate gene names: 45358882

Gene position: 1305905-1306354 (Clockwise)

Preceding gene: 45358868

Following gene: 45358883

Centisome position: 78.62

GC content: 37.56

Gene sequence:

>450_bases
GTGACTCAGACAGAATTCAAACACAGAATTAGAATATCAAAAACAGACCTTGAAGGTAAAAATCCACTTGAATACGCACT
ACAGGACATGAAAGGTATCGGTAGAGCGATGGCTAGAGCAGTAATTAGAGTTACTGAATTAGACCCTAAACAACAAGCTG
GTTACTTAGCTGACGAAGACGTTTTAAAAATAGAATCAGTATTAGAAGACCCTGCAACACATGGAATTCCTTCATGGATG
TTTAACAGGAAAAAAGATGTTTACTCAGGACTCGATAAACACCTAATCGAAACAGACCTCGTACTCACAGTACAAGAAGA
TATCACCAACATGAAAAAGATCAGATGCTATAAAGGTATCAGACACGAATTAAGATTACCATGTAGGGGACAGAGAACCA
GAGGTTCATTCAGAAAAGGAACTTCAATGGGAGTTAAGAGGAAAAAATAA

Upstream 100 bases:

>100_bases
AGGCTTTGCCTCCCGGGGGTTCAAATCCCCCTCTCTGCGCCATTTATTTTTTTATTACTATAATTATCAGTCAAACACGA
AGATCTCTGGAGGTGCAAGA

Downstream 100 bases:

>100_bases
TAAAATAATAAAAAGGTGAAAAAATGGGAGATCCAAGAAGATTGGGTAAAAAATACGACACACCTAACCATCCATGGATT
GGGGAAAGGATCCAGAAAGA

Product: 30S ribosomal protein S13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MTQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWM
FNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQRTRGSFRKGTSMGVKRKK

Sequences:

>Translated_149_residues
MTQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWM
FNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQRTRGSFRKGTSMGVKRKK
>Mature_148_residues
TQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADEDVLKIESVLEDPATHGIPSWMF
NRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGIRHELRLPCRGQRTRGSFRKGTSMGVKRKK

Specific function: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicat

COG id: COG0099

COG function: function code J; Ribosomal protein S13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S13P family

Homologues:

Organism=Homo sapiens, GI11968182, Length=145, Percent_Identity=33.7931034482759, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17542018, Length=145, Percent_Identity=37.9310344827586, Blast_Score=114, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6323615, Length=137, Percent_Identity=32.8467153284672, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320658, Length=137, Percent_Identity=32.8467153284672, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17136882, Length=145, Percent_Identity=33.1034482758621, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24656100, Length=145, Percent_Identity=33.1034482758621, Blast_Score=105, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS13_METMP (Q6LXN1)

Other databases:

- EMBL:   BX950229
- RefSeq:   NP_988439.1
- ProteinModelPortal:   Q6LXN1
- SMR:   Q6LXN1
- GeneID:   2762139
- GenomeReviews:   BX950229_GR
- KEGG:   mmp:MMP1319
- NMPDR:   fig|267377.1.peg.1319
- HOGENOM:   HBG737405
- OMA:   MNTNIDG
- ProtClustDB:   PRK04053
- BioCyc:   MMAR267377:MMP1319-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01315_A
- InterPro:   IPR001892
- InterPro:   IPR010979
- InterPro:   IPR019977
- PIRSF:   PIRSF002134
- TIGRFAMs:   TIGR03629

Pfam domain/function: PF00416 Ribosomal_S13; SSF46946 Ribosomal_H2TH

EC number: NA

Molecular weight: Translated: 17171; Mature: 17040

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00646 RIBOSOMAL_S13_1; PS50159 RIBOSOMAL_S13_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADED
CCCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHH
VLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGI
HHHHHHHHHCHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHH
RHELRLPCRGQRTRGSFRKGTSMGVKRKK
HHHCCCCCCCCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure 
TQTEFKHRIRISKTDLEGKNPLEYALQDMKGIGRAMARAVIRVTELDPKQQAGYLADED
CCCCCHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHH
VLKIESVLEDPATHGIPSWMFNRKKDVYSGLDKHLIETDLVLTVQEDITNMKKIRCYKGI
HHHHHHHHHCHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHH
RHELRLPCRGQRTRGSFRKGTSMGVKRKK
HHHCCCCCCCCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA