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The map label for this gene is ydjX [C]

Identifier: 37680492

GI number: 37680492

Start: 2328828

End: 2329505

Strand: Direct

Name: ydjX [C]

Synonym: VV2308

Alternate gene names: 37680492

Gene position: 2328828-2329505 (Clockwise)

Preceding gene: 37680491

Following gene: 37680493

Centisome position: 69.42

GC content: 43.36

Gene sequence:

>678_bases
ATGAACAAAAAACTCGTATTCGGAATCTTGCTTATCGCGACCATTATTTTATTGGCGGTTAATTTTAGTCAATACCTCAC
ACTCGACAACGCTAAAGCACAACAACTTGCCCTGAACAGTTTTATTGAAGAAAACTTTCTGTTTGCTTCAATAAGCTATT
TTGTCATTTACGTTGGTCTTACCGCCTTTTCAGTACCAGGAGCAACCGTCGTCACACTATTGGGCGCTGCTCTGTTTGGT
TTTTGGTATAGCCTACTGCTTGTCTCATTTGCCAGCACCATTGGAGCAACCATCGCATTTTTGAGTAGTCGCTACCTGCT
AAAAGATTGGGTGCAGGCACGTTTTGGAGACAAACTTAGCGCGATCAACCAAGGCGTTGAAAAGGATGGCGCCTTTTATC
TATTTTCGTTACGCCTGATCCCAGTCTTCCCATTTTTCCTTATTAACTTGCTGATGGGGTTAACACCAATTTCCATTGGT
CGTTACTATCTTACTAGCCAGATCGGCATGCTACCTGGTACGGCTGTTTACCTAAATGCGGGGACACAATTGGCCGACAT
CAACTCGTTGTCGGGGATACTTTCACCGACAGTATTAGCCTCATTTGCGTTACTGGGTGTCTTTCCTATCGCTGTAAAAT
GGATCATGAGTAAATTTAGACCTCAGCTCTCTTCATAA

Upstream 100 bases:

>100_bases
AGATTAAAACCACATCAAAATGATGTGGTTTTTTTATATCGTTTGAAAGATTTTCTGTCTCAATCAGGTCTGATAACCAA
GCTATCTGGAGAAAAATTGA

Downstream 100 bases:

>100_bases
AAGGAAGCCACTTATGAAGATATTCACCGCCAACACCCCTATAGAAGCGCATATCGTGTGTCAATTGCTGATTAATGAAG
CGGTACAATGTGAGGTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MNKKLVFGILLIATIILLAVNFSQYLTLDNAKAQQLALNSFIEENFLFASISYFVIYVGLTAFSVPGATVVTLLGAALFG
FWYSLLLVSFASTIGATIAFLSSRYLLKDWVQARFGDKLSAINQGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPISIG
RYYLTSQIGMLPGTAVYLNAGTQLADINSLSGILSPTVLASFALLGVFPIAVKWIMSKFRPQLSS

Sequences:

>Translated_225_residues
MNKKLVFGILLIATIILLAVNFSQYLTLDNAKAQQLALNSFIEENFLFASISYFVIYVGLTAFSVPGATVVTLLGAALFG
FWYSLLLVSFASTIGATIAFLSSRYLLKDWVQARFGDKLSAINQGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPISIG
RYYLTSQIGMLPGTAVYLNAGTQLADINSLSGILSPTVLASFALLGVFPIAVKWIMSKFRPQLSS
>Mature_225_residues
MNKKLVFGILLIATIILLAVNFSQYLTLDNAKAQQLALNSFIEENFLFASISYFVIYVGLTAFSVPGATVVTLLGAALFG
FWYSLLLVSFASTIGATIAFLSSRYLLKDWVQARFGDKLSAINQGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPISIG
RYYLTSQIGMLPGTAVYLNAGTQLADINSLSGILSPTVLASFALLGVFPIAVKWIMSKFRPQLSS

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=208, Percent_Identity=25, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081964, Length=187, Percent_Identity=28.3422459893048, Blast_Score=68, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17532687, Length=193, Percent_Identity=26.4248704663212, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533280, Length=187, Percent_Identity=21.3903743315508, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24567; Mature: 24567

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKLVFGILLIATIILLAVNFSQYLTLDNAKAQQLALNSFIEENFLFASISYFVIYVGL
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFSVPGATVVTLLGAALFGFWYSLLLVSFASTIGATIAFLSSRYLLKDWVQARFGDKLS
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AINQGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPISIGRYYLTSQIGMLPGTAVYLNA
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEC
GTQLADINSLSGILSPTVLASFALLGVFPIAVKWIMSKFRPQLSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNKKLVFGILLIATIILLAVNFSQYLTLDNAKAQQLALNSFIEENFLFASISYFVIYVGL
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAFSVPGATVVTLLGAALFGFWYSLLLVSFASTIGATIAFLSSRYLLKDWVQARFGDKLS
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
AINQGVEKDGAFYLFSLRLIPVFPFFLINLLMGLTPISIGRYYLTSQIGMLPGTAVYLNA
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEC
GTQLADINSLSGILSPTVLASFALLGVFPIAVKWIMSKFRPQLSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]