| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is endo I [H]
Identifier: 37680181
GI number: 37680181
Start: 1996169
End: 1999021
Strand: Direct
Name: endo I [H]
Synonym: VV1997
Alternate gene names: 37680181
Gene position: 1996169-1999021 (Clockwise)
Preceding gene: 37680180
Following gene: 229047212
Centisome position: 59.51
GC content: 51.1
Gene sequence:
>2853_bases ATGTACAGAAAAACCACAACACTCGCCAGCTTGATGCTCACGGTTGGGTTCGCATTGAATCCAATCTCTGCGGCATTGGC GGAAACGGTGCAAATCGGCGTGCAAGCGCCTTCGGAAAGTCAATGGTGGAGCACTTATCGCGTGCAAGTGAGCAACGCCG GTGATAGCCAAATTGACATGCGTGAATCGAACATCGAGTTTGTTTTGCCAAGTGCGGTCAACGATGTTCAATGGGCGTCA GAGCATCTTTCTTACCCAAGCAGCGCCATCACTCATCAACCCATCCAAGGTGGCGTAAGGCATATCGTGACGTTTCAATT TCCTCAAGGGGATTGGGTCAAAACCACTTTGCAAGCCAATCAATCGTTTCAGTTGACCATAGGTTACAACGGGCAACTGA ACGATTTGGCCCAATTTGAACAGAGCATCAAATTCAATGGCGACGGGGGCACTCTTCCTCCGGTGGATCCTGAGGTTGAA CTCACCATTCTTGCACCTGTTGAAGGTGCCACACTAACCGTATCAGAGCCGACCTCTATCTCCATTTCTCTTTCTGGTCC GGCAGACAAAGTGGAGTTTTGGGCCGAAAATCGTCGACTTGGCGAGCAAAAAGTGGACCAAAACACGCTGGAATACCAGC AAAGCTGGACACCTAACACCACAGGCACGCAGACTGTTACCGCGCTGGCGTTTGACCAAGCAGGTAAACAGTTGGAATCA CAAAGCGTGTCTGTTTCCGTCATTCCGGATCACCAGTACAGTGCGCCAGAAGTGCGCTTCCTGACACCACAAAGTGGTCA AAGCTTTAAGAAAACAGAACGTATTGCCATTGCGGTTGAAGCCTTTGACGCCGATGACGATTTAAAGAGCGTCACCTTGG ATGCCAATGGCGTAGAGATTTGCCAATTTGAACCTGCCGAAAGCACGCCTTTCGAATGTGAATGGCAGCCTGACCATGCT GGTAGCGTGACGCTGTCGGCCACCGCGGTTGATGAACAAAAGCTACAAAGCGTAGCGCAAGTTAACATCTCGGTGACCGA GTCCAATAACAGTTGTGGCGATGTGCCTCGCTATCAAGATGGCGTCAATTACCAAGTGGGCGATCAAGTCACCAATGTCG GCGAGATTTTCTCTTGTAAAGTGTTTGGTTGGTGTGGCAACCCTGTATGGGCACCTGGAACCGGACACCCGAGCTACCCG GACGCTTGGAAAGATGCCTGGGATCAAGTCGGTCAATGTGATCCTAATTACGCGCCAGAAGTCGATCTGCTTTCACCATC GCATGGCGATCGCCTCACACCAAACCAACCATTCGATGTCATGTTAACCGCGACTGACCAAGACGGTGATATCGAAAAAG TCGACGTGCTACTTAATGGAAAAGTGGTGGCAACCGCTGACGGGCAACAAGGTGTCGACACTTATCGCCTCACAATCGCG GGGCAAGCTGAGGGCATGTACCAATTGGCGGCGATGGCCTATGACGACAAAGGCGCGAGCAGCGAAACGTCACCAATTAC CTTGGCAATCACGGATAAAACACTGGTTGTAGGGCTCACCTCACCAAGCGACGGTTCGGTCTTTACTCAAGGCCGTGCGA TCACGTTGACCGCCGATGCGTCGAGTTTTGTCGGAGAAGTCACGCAAGTGCGTTTCTACGCCGATGACCTGCTGATTGCG ACGGTAACACAAAGCCCATACCAGCATGAGTGGTTAGGGGCACAGCTTGGCCAACATCAGCTTTACGCAATCGCGACGGA TTCCAAAGGCAACGAGCAAACCTCGGTGGTTTCGCACATCGAAGTCAAAGAAGCCAAGCCCGATACTGGCTTGCGTGACA ACCCAGATCGCAGCATCACCTATCTTACCTCTTGGGGTTTGACCAACATCGAAGAGCTTCAACGCTCTCAGGGTGATGCT TACTTCCTCTCCTTTGGTAAGTGGGACAGCGCCGGCAATATCCAAATCAGTGACGACATGCTGACCCCAAGCTACAACTC CGATTGGATGTCACCAACGTATCAATCGTGGACGGAACTCAAACATGCCCAACCGCGCAAAGCGATGATGGTGGCCTTTG GCGGCGCGACCTACGAAAGCATGTGGAACGACATGGCGACCGAGCAAGGCCGTCAGAATATCGCCAACAGTTTGGTGAAA CTGATGAACCAACCTTACCCAGTTTACAAACGCAATTTGAAACCGGAAGAGATGGTTGGCGAGTGTTTGGCGACCGATTG GAGCGGCCAATGTGACTACAGCAAGTATCAGCTGGCAGGTTACGTTTCTATTGATGGTATCGACTTCGACTACGAGACGA CCGCGCGTTTGACCGAACAATCGAATCGCAATTTGGAAGACCTGATTCAACGTATTCGTGCTCAAGTGGGCGACAGCAAG CTGCTCTCACTGACCACCTATCACGTCGGTGCGGATCCAGAAGCGTGTTCAAACCCAGCGGTGTTTGAGAACTGCTCATT TATTGAACCTGCACGCTCTATTCATCACGGTGAAGTGATCTCTTTGTTGCAAAACACCAAACAGAGCATCGATTTCTTCA ATGTGATGGCCTATGACGCGGGGGAAAACTTCCGATATGACGTGGCAATGGCCAACTATGCTGAGCACGTAGGCGATCCG TCGAAAATCATCCTTGGGGCGACCATCAACAGCCAATGGGGACCAAACGGGCGCTTTGTGGAAACCCGCGCAAACAACAT TGAGCGTGCACGTTGGCAAAAACAGAATGGCTATGGCGGCTTCTTTATCTGGACCTTAGGTTCCAATACTGAAAGCCTTT CAATGGCAGAACAAGTGGATTACTTCAATCAAATGATCGAACAAAACCAGTAA
Upstream 100 bases:
>100_bases CTAATTTGTAAGAATTTTCCTTCAATCAAATTGTTTTATCTCGAAGTACTATTTCCTTCGAAACCAAGCTCATTGGAAAG TGAAACAATAGGGAAAAACC
Downstream 100 bases:
>100_bases TCGTCTGCCTCTCTAGAGCCGCATCTGCGGCTCTTTTTCTTTATCTCTGTCGTATTTAACGCCACGACTACATTAGCAAT AACTCATTCAGTTTTTTCGA
Product: putative chitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 950; Mature: 950
Protein sequence:
>950_residues MYRKTTTLASLMLTVGFALNPISAALAETVQIGVQAPSESQWWSTYRVQVSNAGDSQIDMRESNIEFVLPSAVNDVQWAS EHLSYPSSAITHQPIQGGVRHIVTFQFPQGDWVKTTLQANQSFQLTIGYNGQLNDLAQFEQSIKFNGDGGTLPPVDPEVE LTILAPVEGATLTVSEPTSISISLSGPADKVEFWAENRRLGEQKVDQNTLEYQQSWTPNTTGTQTVTALAFDQAGKQLES QSVSVSVIPDHQYSAPEVRFLTPQSGQSFKKTERIAIAVEAFDADDDLKSVTLDANGVEICQFEPAESTPFECEWQPDHA GSVTLSATAVDEQKLQSVAQVNISVTESNNSCGDVPRYQDGVNYQVGDQVTNVGEIFSCKVFGWCGNPVWAPGTGHPSYP DAWKDAWDQVGQCDPNYAPEVDLLSPSHGDRLTPNQPFDVMLTATDQDGDIEKVDVLLNGKVVATADGQQGVDTYRLTIA GQAEGMYQLAAMAYDDKGASSETSPITLAITDKTLVVGLTSPSDGSVFTQGRAITLTADASSFVGEVTQVRFYADDLLIA TVTQSPYQHEWLGAQLGQHQLYAIATDSKGNEQTSVVSHIEVKEAKPDTGLRDNPDRSITYLTSWGLTNIEELQRSQGDA YFLSFGKWDSAGNIQISDDMLTPSYNSDWMSPTYQSWTELKHAQPRKAMMVAFGGATYESMWNDMATEQGRQNIANSLVK LMNQPYPVYKRNLKPEEMVGECLATDWSGQCDYSKYQLAGYVSIDGIDFDYETTARLTEQSNRNLEDLIQRIRAQVGDSK LLSLTTYHVGADPEACSNPAVFENCSFIEPARSIHHGEVISLLQNTKQSIDFFNVMAYDAGENFRYDVAMANYAEHVGDP SKIILGATINSQWGPNGRFVETRANNIERARWQKQNGYGGFFIWTLGSNTESLSMAEQVDYFNQMIEQNQ
Sequences:
>Translated_950_residues MYRKTTTLASLMLTVGFALNPISAALAETVQIGVQAPSESQWWSTYRVQVSNAGDSQIDMRESNIEFVLPSAVNDVQWAS EHLSYPSSAITHQPIQGGVRHIVTFQFPQGDWVKTTLQANQSFQLTIGYNGQLNDLAQFEQSIKFNGDGGTLPPVDPEVE LTILAPVEGATLTVSEPTSISISLSGPADKVEFWAENRRLGEQKVDQNTLEYQQSWTPNTTGTQTVTALAFDQAGKQLES QSVSVSVIPDHQYSAPEVRFLTPQSGQSFKKTERIAIAVEAFDADDDLKSVTLDANGVEICQFEPAESTPFECEWQPDHA GSVTLSATAVDEQKLQSVAQVNISVTESNNSCGDVPRYQDGVNYQVGDQVTNVGEIFSCKVFGWCGNPVWAPGTGHPSYP DAWKDAWDQVGQCDPNYAPEVDLLSPSHGDRLTPNQPFDVMLTATDQDGDIEKVDVLLNGKVVATADGQQGVDTYRLTIA GQAEGMYQLAAMAYDDKGASSETSPITLAITDKTLVVGLTSPSDGSVFTQGRAITLTADASSFVGEVTQVRFYADDLLIA TVTQSPYQHEWLGAQLGQHQLYAIATDSKGNEQTSVVSHIEVKEAKPDTGLRDNPDRSITYLTSWGLTNIEELQRSQGDA YFLSFGKWDSAGNIQISDDMLTPSYNSDWMSPTYQSWTELKHAQPRKAMMVAFGGATYESMWNDMATEQGRQNIANSLVK LMNQPYPVYKRNLKPEEMVGECLATDWSGQCDYSKYQLAGYVSIDGIDFDYETTARLTEQSNRNLEDLIQRIRAQVGDSK LLSLTTYHVGADPEACSNPAVFENCSFIEPARSIHHGEVISLLQNTKQSIDFFNVMAYDAGENFRYDVAMANYAEHVGDP SKIILGATINSQWGPNGRFVETRANNIERARWQKQNGYGGFFIWTLGSNTESLSMAEQVDYFNQMIEQNQ >Mature_950_residues MYRKTTTLASLMLTVGFALNPISAALAETVQIGVQAPSESQWWSTYRVQVSNAGDSQIDMRESNIEFVLPSAVNDVQWAS EHLSYPSSAITHQPIQGGVRHIVTFQFPQGDWVKTTLQANQSFQLTIGYNGQLNDLAQFEQSIKFNGDGGTLPPVDPEVE LTILAPVEGATLTVSEPTSISISLSGPADKVEFWAENRRLGEQKVDQNTLEYQQSWTPNTTGTQTVTALAFDQAGKQLES QSVSVSVIPDHQYSAPEVRFLTPQSGQSFKKTERIAIAVEAFDADDDLKSVTLDANGVEICQFEPAESTPFECEWQPDHA GSVTLSATAVDEQKLQSVAQVNISVTESNNSCGDVPRYQDGVNYQVGDQVTNVGEIFSCKVFGWCGNPVWAPGTGHPSYP DAWKDAWDQVGQCDPNYAPEVDLLSPSHGDRLTPNQPFDVMLTATDQDGDIEKVDVLLNGKVVATADGQQGVDTYRLTIA GQAEGMYQLAAMAYDDKGASSETSPITLAITDKTLVVGLTSPSDGSVFTQGRAITLTADASSFVGEVTQVRFYADDLLIA TVTQSPYQHEWLGAQLGQHQLYAIATDSKGNEQTSVVSHIEVKEAKPDTGLRDNPDRSITYLTSWGLTNIEELQRSQGDA YFLSFGKWDSAGNIQISDDMLTPSYNSDWMSPTYQSWTELKHAQPRKAMMVAFGGATYESMWNDMATEQGRQNIANSLVK LMNQPYPVYKRNLKPEEMVGECLATDWSGQCDYSKYQLAGYVSIDGIDFDYETTARLTEQSNRNLEDLIQRIRAQVGDSK LLSLTTYHVGADPEACSNPAVFENCSFIEPARSIHHGEVISLLQNTKQSIDFFNVMAYDAGENFRYDVAMANYAEHVGDP SKIILGATINSQWGPNGRFVETRANNIERARWQKQNGYGGFFIWTLGSNTESLSMAEQVDYFNQMIEQNQ
Specific function: Hydrolyzes chitin oligosaccharides; (GlcNAc)4 to (GlcNAc)2 and (GlcNAc)5,6 to (GlcNAc)2 and (GlcNAc)3. Inactive towards chitin, glucosamine oligosaccharides, glycoproteins and glycopeptides containing (GlcNAc)2 [H]
COG id: COG3979
COG function: function code R; Uncharacterized protein contain chitin-binding domain type 3
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 18 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR009470 - InterPro: IPR011583 - InterPro: IPR001223 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02839 CBM_5_12; PF06483 ChiC; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 104606; Mature: 104606
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRKTTTLASLMLTVGFALNPISAALAETVQIGVQAPSESQWWSTYRVQVSNAGDSQIDM CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCEEEE RESNIEFVLPSAVNDVQWASEHLSYPSSAITHQPIQGGVRHIVTFQFPQGDWVKTTLQAN ECCCCCEEECCCCCHHHHHHHHHCCCCHHCCCCCHHCCCEEEEEEECCCCCEEEEEEECC QSFQLTIGYNGQLNDLAQFEQSIKFNGDGGTLPPVDPEVELTILAPVEGATLTVSEPTSI CEEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEE SISLSGPADKVEFWAENRRLGEQKVDQNTLEYQQSWTPNTTGTQTVTALAFDQAGKQLES EEEECCCCHHHHHHHHHHHCCHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHC QSVSVSVIPDHQYSAPEVRFLTPQSGQSFKKTERIAIAVEAFDADDDLKSVTLDANGVEI CCEEEEEECCCCCCCCCEEEECCCCCCCHHCCCEEEEEEEEECCCCCCEEEEECCCCEEE CQFEPAESTPFECEWQPDHAGSVTLSATAVDEQKLQSVAQVNISVTESNNSCGDVPRYQD EEECCCCCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHEEEEEEEECCCCCCCCCCCCC GVNYQVGDQVTNVGEIFSCKVFGWCGNPVWAPGTGHPSYPDAWKDAWDQVGQCDPNYAPE CCCEECCCHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC VDLLSPSHGDRLTPNQPFDVMLTATDQDGDIEKVDVLLNGKVVATADGQQGVDTYRLTIA EEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEEE GQAEGMYQLAAMAYDDKGASSETSPITLAITDKTLVVGLTSPSDGSVFTQGRAITLTADA ECCCCCEEEEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCEEECCEEEEEEECC SSFVGEVTQVRFYADDLLIATVTQSPYQHEWLGAQLGQHQLYAIATDSKGNEQTSVVSHI HHHHHHHHEEEEEECCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHEEEE EVKEAKPDTGLRDNPDRSITYLTSWGLTNIEELQRSQGDAYFLSFGKWDSAGNIQISDDM EEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCC LTPSYNSDWMSPTYQSWTELKHAQPRKAMMVAFGGATYESMWNDMATEQGRQNIANSLVK CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LMNQPYPVYKRNLKPEEMVGECLATDWSGQCDYSKYQLAGYVSIDGIDFDYETTARLTEQ HHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHH SNRNLEDLIQRIRAQVGDSKLLSLTTYHVGADPEACSNPAVFENCSFIEPARSIHHGEVI CCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHCCCCCCCCCCCCCCHHHHHCCHHHH SLLQNTKQSIDFFNVMAYDAGENFRYDVAMANYAEHVGDPSKIILGATINSQWGPNGRFV HHHHHHHHHCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCEEEEEEEECCCCCCCCCEE ETRANNIERARWQKQNGYGGFFIWTLGSNTESLSMAEQVDYFNQMIEQNQ EECCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MYRKTTTLASLMLTVGFALNPISAALAETVQIGVQAPSESQWWSTYRVQVSNAGDSQIDM CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCEEEE RESNIEFVLPSAVNDVQWASEHLSYPSSAITHQPIQGGVRHIVTFQFPQGDWVKTTLQAN ECCCCCEEECCCCCHHHHHHHHHCCCCHHCCCCCHHCCCEEEEEEECCCCCEEEEEEECC QSFQLTIGYNGQLNDLAQFEQSIKFNGDGGTLPPVDPEVELTILAPVEGATLTVSEPTSI CEEEEEEECCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCEEEECCCCEE SISLSGPADKVEFWAENRRLGEQKVDQNTLEYQQSWTPNTTGTQTVTALAFDQAGKQLES EEEECCCCHHHHHHHHHHHCCHHHHCCHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHC QSVSVSVIPDHQYSAPEVRFLTPQSGQSFKKTERIAIAVEAFDADDDLKSVTLDANGVEI CCEEEEEECCCCCCCCCEEEECCCCCCCHHCCCEEEEEEEEECCCCCCEEEEECCCCEEE CQFEPAESTPFECEWQPDHAGSVTLSATAVDEQKLQSVAQVNISVTESNNSCGDVPRYQD EEECCCCCCCEEEEECCCCCCEEEEEEEECCHHHHHHHHEEEEEEEECCCCCCCCCCCCC GVNYQVGDQVTNVGEIFSCKVFGWCGNPVWAPGTGHPSYPDAWKDAWDQVGQCDPNYAPE CCCEECCCHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC VDLLSPSHGDRLTPNQPFDVMLTATDQDGDIEKVDVLLNGKVVATADGQQGVDTYRLTIA EEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCEEEEECCCCCCCEEEEEEEE GQAEGMYQLAAMAYDDKGASSETSPITLAITDKTLVVGLTSPSDGSVFTQGRAITLTADA ECCCCCEEEEEEEECCCCCCCCCCCEEEEEECCEEEEEECCCCCCCEEECCEEEEEEECC SSFVGEVTQVRFYADDLLIATVTQSPYQHEWLGAQLGQHQLYAIATDSKGNEQTSVVSHI HHHHHHHHEEEEEECCEEEEEECCCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHEEEE EVKEAKPDTGLRDNPDRSITYLTSWGLTNIEELQRSQGDAYFLSFGKWDSAGNIQISDDM EEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCC LTPSYNSDWMSPTYQSWTELKHAQPRKAMMVAFGGATYESMWNDMATEQGRQNIANSLVK CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH LMNQPYPVYKRNLKPEEMVGECLATDWSGQCDYSKYQLAGYVSIDGIDFDYETTARLTEQ HHCCCCCHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHH SNRNLEDLIQRIRAQVGDSKLLSLTTYHVGADPEACSNPAVFENCSFIEPARSIHHGEVI CCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHCCCCCCCCCCCCCCHHHHHCCHHHH SLLQNTKQSIDFFNVMAYDAGENFRYDVAMANYAEHVGDPSKIILGATINSQWGPNGRFV HHHHHHHHHCCEEEEEEECCCCCEEEEEEEHHHHHHCCCCCEEEEEEEECCCCCCCCCEE ETRANNIERARWQKQNGYGGFFIWTLGSNTESLSMAEQVDYFNQMIEQNQ EECCCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969204 [H]