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The map label for this gene is oppA [H]

Identifier: 37523695

GI number: 37523695

Start: 4321944

End: 4323584

Strand: Reverse

Name: oppA [H]

Synonym: gll4126

Alternate gene names: 37523695

Gene position: 4323584-4321944 (Counterclockwise)

Preceding gene: 37523696

Following gene: 37523694

Centisome position: 92.8

GC content: 63.32

Gene sequence:

>1641_bases
GTGAACGCCAAACGCTCTAAATTCCTGCTCGTCCTCGCAGCACTCGCCCTGGCCGGCTGCACCTCCACCGACGCCGGGCC
GCTGTTTTTCGGCAAGCTCGTGCCCCCCACCGATAACGTGTTGCGGGTGGGCAACGGCGCCGAACCGCGCTCGTTCGATC
CGCACAAATCCTCCGGCATCCCCGAATCGCACATCTTCGACAACGTCCACGAGGGCCTCACCGGCTACGATCCGCGCACC
CTGGCGCCGCGGCCGGCCATGGCACGGCACTGGCAGGCCGATGCGAGCGCCGGGGTCTGGACGTTTACCCTGCGACAGGA
CGGCCGCTTCAGCGACGGCACTCCGATTACCGCCCGCGACTTTGTCTGGACCTGGCGGCGGATCGCCACCCCGGACACCG
CCTCGCCCTACGCGAGCTTTATGTACTACGTCAAAAACGGCCAGGCGGTGGCAGAAGGCAAGCTGCCGCCTGAAAAGCTC
GGGGTGAGCGCCGTGGACGAGTACACACTGCGCGTCGAGATGGAGAAGCCCACGGCTTTTTTCGCCAAGATGACGCCCCA
CTACGCCTTTACTGTCCTGCCGCGCCACGCAATCGAAAAGTACGGCGATCTCTGGACGCGCCCGAAAAACTTTGTCGGCA
GCGGACCATTTGTGATCGCCGAGGCAGTGCCCTACAGCCAGGTGGTGCTCAAGAAAAATCCCCTCTACTGGGATAGCGGC
CGAGTCAGGCTCGACAAAGTGGTGCTGATCCCCGCCCAGGAGGAGTCTCAGAACGCCAATCTCTACCGCGCCGGTGAGAT
CGACGTGGTCTTCAGCAACTATCTGCCGGCACCGTTCATCCGCAAACTGCGCACTTACCGGGACTTTCAAGGCGGAGCCC
AATTCACCAATTACTACTACAGCCTCAACGTCAAGCGCGGTCCGCTCAAGGACGTGCGGGTGCGCCGCGCCCTCAATCTG
GCTCTTGACAAAAAAGCGATTGCCGAGCGCTTCGTCGGGCGCGGCGAGAAACCGGCCGCGACCTTTGTTCCCCCCGGCGT
ACCGGGCTACGTCCCGCCCCCCGGCCCCGGCTACGACCCCGAAACGGCACGCCGTCTGCTTGCCGAGGCGGGCTATCCGG
GCGGCAAAGGATTTCCGGTCCTCACGCTCTACTACAACACCCAGGAGAACCACCGCACGGTGGCCCAGGCCGCCCAGCGG
ATGTGGAAGGAACAATTGGGCATCCGCATCAATCTGCAAAACGAAGAGTGGCAGACCTTCCAGGCCCGCCGCGAGCGGCG
CGACTTCGATGTGGCCCGCGACTCGTGGGTGGGCGATTACATCGACCCGAGCACGTATCTCGACTTGTTGTCCCGCGATA
CCCTCCAGAACCACCCCGGCTGGGTGGACCCGAAGTACACCCGCCTGATGAACCAGGCGAACGCCGAACCGGACGAACAA
AAGCGCAACTGCCTGCTGCGAGAAGCCGAAGCCTACCTGATTGACCAGATGCCCGTGATCCCCGTGTATTTCTACGCCCT
GGCTTATATGAAAAAGCCCTGGGTGGCAGGCTGGTACCCCAACTTGCTCGATCAGCACCCCTTCAAGTACGTTTCGATTG
ACCGCGACTGGCCCCAGCGCCGCCTTGCCCGCCAACCCTAG

Upstream 100 bases:

>100_bases
TTGGTCTACAACACGATCAACGACATCCAGTCCTACCAGCCGCTCAGCGTCGGCAACTTCCGCATCGCGGTGATGGCCCA
GGGGCTGCGCTACAACCTCC

Downstream 100 bases:

>100_bases
CGACCCACCCGCCGATGCTGAACTTTATTCTCCGACGCCTACTGTTTGCGATCCCCGTGCTGCTTGTCGTGGTCACGATC
AGCTTCTTTCTGGTGCGGCT

Product: oligopeptide ABC transporter periplasmic oligopeptide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 546

Protein sequence:

>546_residues
MNAKRSKFLLVLAALALAGCTSTDAGPLFFGKLVPPTDNVLRVGNGAEPRSFDPHKSSGIPESHIFDNVHEGLTGYDPRT
LAPRPAMARHWQADASAGVWTFTLRQDGRFSDGTPITARDFVWTWRRIATPDTASPYASFMYYVKNGQAVAEGKLPPEKL
GVSAVDEYTLRVEMEKPTAFFAKMTPHYAFTVLPRHAIEKYGDLWTRPKNFVGSGPFVIAEAVPYSQVVLKKNPLYWDSG
RVRLDKVVLIPAQEESQNANLYRAGEIDVVFSNYLPAPFIRKLRTYRDFQGGAQFTNYYYSLNVKRGPLKDVRVRRALNL
ALDKKAIAERFVGRGEKPAATFVPPGVPGYVPPPGPGYDPETARRLLAEAGYPGGKGFPVLTLYYNTQENHRTVAQAAQR
MWKEQLGIRINLQNEEWQTFQARRERRDFDVARDSWVGDYIDPSTYLDLLSRDTLQNHPGWVDPKYTRLMNQANAEPDEQ
KRNCLLREAEAYLIDQMPVIPVYFYALAYMKKPWVAGWYPNLLDQHPFKYVSIDRDWPQRRLARQP

Sequences:

>Translated_546_residues
MNAKRSKFLLVLAALALAGCTSTDAGPLFFGKLVPPTDNVLRVGNGAEPRSFDPHKSSGIPESHIFDNVHEGLTGYDPRT
LAPRPAMARHWQADASAGVWTFTLRQDGRFSDGTPITARDFVWTWRRIATPDTASPYASFMYYVKNGQAVAEGKLPPEKL
GVSAVDEYTLRVEMEKPTAFFAKMTPHYAFTVLPRHAIEKYGDLWTRPKNFVGSGPFVIAEAVPYSQVVLKKNPLYWDSG
RVRLDKVVLIPAQEESQNANLYRAGEIDVVFSNYLPAPFIRKLRTYRDFQGGAQFTNYYYSLNVKRGPLKDVRVRRALNL
ALDKKAIAERFVGRGEKPAATFVPPGVPGYVPPPGPGYDPETARRLLAEAGYPGGKGFPVLTLYYNTQENHRTVAQAAQR
MWKEQLGIRINLQNEEWQTFQARRERRDFDVARDSWVGDYIDPSTYLDLLSRDTLQNHPGWVDPKYTRLMNQANAEPDEQ
KRNCLLREAEAYLIDQMPVIPVYFYALAYMKKPWVAGWYPNLLDQHPFKYVSIDRDWPQRRLARQP
>Mature_546_residues
MNAKRSKFLLVLAALALAGCTSTDAGPLFFGKLVPPTDNVLRVGNGAEPRSFDPHKSSGIPESHIFDNVHEGLTGYDPRT
LAPRPAMARHWQADASAGVWTFTLRQDGRFSDGTPITARDFVWTWRRIATPDTASPYASFMYYVKNGQAVAEGKLPPEKL
GVSAVDEYTLRVEMEKPTAFFAKMTPHYAFTVLPRHAIEKYGDLWTRPKNFVGSGPFVIAEAVPYSQVVLKKNPLYWDSG
RVRLDKVVLIPAQEESQNANLYRAGEIDVVFSNYLPAPFIRKLRTYRDFQGGAQFTNYYYSLNVKRGPLKDVRVRRALNL
ALDKKAIAERFVGRGEKPAATFVPPGVPGYVPPPGPGYDPETARRLLAEAGYPGGKGFPVLTLYYNTQENHRTVAQAAQR
MWKEQLGIRINLQNEEWQTFQARRERRDFDVARDSWVGDYIDPSTYLDLLSRDTLQNHPGWVDPKYTRLMNQANAEPDEQ
KRNCLLREAEAYLIDQMPVIPVYFYALAYMKKPWVAGWYPNLLDQHPFKYVSIDRDWPQRRLARQP

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=483, Percent_Identity=38.0952380952381, Blast_Score=349, Evalue=3e-97,
Organism=Escherichia coli, GI1787495, Length=518, Percent_Identity=36.4864864864865, Blast_Score=344, Evalue=1e-95,
Organism=Escherichia coli, GI1789397, Length=514, Percent_Identity=32.6848249027237, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1789966, Length=565, Percent_Identity=24.7787610619469, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=23.3918128654971, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1787052, Length=402, Percent_Identity=26.3681592039801, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1789887, Length=477, Percent_Identity=23.8993710691824, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62101; Mature: 62101

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKRSKFLLVLAALALAGCTSTDAGPLFFGKLVPPTDNVLRVGNGAEPRSFDPHKSSGI
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCC
PESHIFDNVHEGLTGYDPRTLAPRPAMARHWQADASAGVWTFTLRQDGRFSDGTPITARD
CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHH
FVWTWRRIATPDTASPYASFMYYVKNGQAVAEGKLPPEKLGVSAVDEYTLRVEMEKPTAF
HHHHHHHHCCCCCCCHHHHHEEEEECCCEEECCCCCHHHHCCCEECCEEEEEEECCCCEE
FAKMTPHYAFTVLPRHAIEKYGDLWTRPKNFVGSGPFVIAEAVPYSQVVLKKNPLYWDSG
HHHCCCCEEEEECCHHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCEEEEECCCCEECCC
RVRLDKVVLIPAQEESQNANLYRAGEIDVVFSNYLPAPFIRKLRTYRDFQGGAQFTNYYY
CEEEEEEEEEECCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEE
SLNVKRGPLKDVRVRRALNLALDKKAIAERFVGRGEKPAATFVPPGVPGYVPPPGPGYDP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ETARRLLAEAGYPGGKGFPVLTLYYNTQENHRTVAQAAQRMWKEQLGIRINLQNEEWQTF
HHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH
QARRERRDFDVARDSWVGDYIDPSTYLDLLSRDTLQNHPGWVDPKYTRLMNQANAEPDEQ
HHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHH
KRNCLLREAEAYLIDQMPVIPVYFYALAYMKKPWVAGWYPNLLDQHPFKYVSIDRDWPQR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCHHH
RLARQP
HHCCCC
>Mature Secondary Structure
MNAKRSKFLLVLAALALAGCTSTDAGPLFFGKLVPPTDNVLRVGNGAEPRSFDPHKSSGI
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCC
PESHIFDNVHEGLTGYDPRTLAPRPAMARHWQADASAGVWTFTLRQDGRFSDGTPITARD
CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCHHH
FVWTWRRIATPDTASPYASFMYYVKNGQAVAEGKLPPEKLGVSAVDEYTLRVEMEKPTAF
HHHHHHHHCCCCCCCHHHHHEEEEECCCEEECCCCCHHHHCCCEECCEEEEEEECCCCEE
FAKMTPHYAFTVLPRHAIEKYGDLWTRPKNFVGSGPFVIAEAVPYSQVVLKKNPLYWDSG
HHHCCCCEEEEECCHHHHHHHHHHHCCCCHHCCCCCEEEEECCCCCEEEEECCCCEECCC
RVRLDKVVLIPAQEESQNANLYRAGEIDVVFSNYLPAPFIRKLRTYRDFQGGAQFTNYYY
CEEEEEEEEEECCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEE
SLNVKRGPLKDVRVRRALNLALDKKAIAERFVGRGEKPAATFVPPGVPGYVPPPGPGYDP
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCH
ETARRLLAEAGYPGGKGFPVLTLYYNTQENHRTVAQAAQRMWKEQLGIRINLQNEEWQTF
HHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHH
QARRERRDFDVARDSWVGDYIDPSTYLDLLSRDTLQNHPGWVDPKYTRLMNQANAEPDEQ
HHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHH
KRNCLLREAEAYLIDQMPVIPVYFYALAYMKKPWVAGWYPNLLDQHPFKYVSIDRDWPQR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCCCHHH
RLARQP
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]