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The map label for this gene is oppB [H]

Identifier: 37523694

GI number: 37523694

Start: 4321009

End: 4321929

Strand: Reverse

Name: oppB [H]

Synonym: gll4125

Alternate gene names: 37523694

Gene position: 4321929-4321009 (Counterclockwise)

Preceding gene: 37523695

Following gene: 37523693

Centisome position: 92.76

GC content: 62.0

Gene sequence:

>921_bases
ATGCTGAACTTTATTCTCCGACGCCTACTGTTTGCGATCCCCGTGCTGCTTGTCGTGGTCACGATCAGCTTCTTTCTGGT
GCGGCTCGCTCCCGGCGGTCCGTTCATGGAGGAGCGCGCCTACCCGCCCGCGGTGATCGAAAAGCTCAACGCCAAGTACG
GTCTGGATAAACCTCTGCACGAACAGTACTTCAACTACATGCAGCGGGTGGTGTTGCATTTTGATCTGGGTCCTTCGACA
CGCTACCTCGATCGCACCGTGGGCGACGTGATCGCCCAGGGGCTTCCCAACTCGATGATTCTGGGGGGAACCGCCTACCT
GACGGCCCTGGTGCTGGGCATGGGGGCCGGGATCGTCGCCGCATTGCGCCAGAACTCCGGGGTGGACTACGGGGCGATGG
CCGCGGCGGTGCTGGGGGTATCGGTTCCCAACTTCGTGCTCGGACCGCTGCTGGTCATTGTGCTCTCCCTCACGCTCTAC
TGGCTGCCCCCGGCGCGCTGGGGGGATCTCTCGCACCTGATTTTGCCCGCTCTCACCCTCAGTGCCCTCTACACCGCCTA
CATCGCCCGCCTCACCCGCAGCGGTCTGGTGGAAGTGCTCCGCTCCGACTACATCCGCACCGCCCGCGCCAAGGGCCTGC
GCGAGAGCGTCGTGCTGTTGCGCCACGCCCTGCGGGGCAGTATTCTGCCGGTGGTTTCCTACTCGGGACCGGCCCTCGCC
TTTTTGCTGGGCGGCACAATTGTTGTGGAAAAACTTTTTTTGATCCCCGGCTTGGGTAACTTCTTTATCGAAGCCGCCAA
CGCCCGCGACAGCTTCATCGTCGTCGGAGTGACGCTGGTGGTCGCCACCTTGCTCATCGTCCTCAACCTGGTGGTCGATA
TCGTCTACGCCCTCATCGATCCACGCATCGCCTATAAATAA

Upstream 100 bases:

>100_bases
ACCCCAACTTGCTCGATCAGCACCCCTTCAAGTACGTTTCGATTGACCGCGACTGGCCCCAGCGCCGCCTTGCCCGCCAA
CCCTAGCGACCCACCCGCCG

Downstream 100 bases:

>100_bases
TCCCCATGCAAACCCCGGTAGAACCCACCGCAGCTACGCTCGCCCCTGAGTCCTTCGAACTGGTCCGGGGCACCAGCCTC
TGGCAGGACGCCCGGCGGCG

Product: oligopeptide ABC transporter permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLNFILRRLLFAIPVLLVVVTISFFLVRLAPGGPFMEERAYPPAVIEKLNAKYGLDKPLHEQYFNYMQRVVLHFDLGPST
RYLDRTVGDVIAQGLPNSMILGGTAYLTALVLGMGAGIVAALRQNSGVDYGAMAAAVLGVSVPNFVLGPLLVIVLSLTLY
WLPPARWGDLSHLILPALTLSALYTAYIARLTRSGLVEVLRSDYIRTARAKGLRESVVLLRHALRGSILPVVSYSGPALA
FLLGGTIVVEKLFLIPGLGNFFIEAANARDSFIVVGVTLVVATLLIVLNLVVDIVYALIDPRIAYK

Sequences:

>Translated_306_residues
MLNFILRRLLFAIPVLLVVVTISFFLVRLAPGGPFMEERAYPPAVIEKLNAKYGLDKPLHEQYFNYMQRVVLHFDLGPST
RYLDRTVGDVIAQGLPNSMILGGTAYLTALVLGMGAGIVAALRQNSGVDYGAMAAAVLGVSVPNFVLGPLLVIVLSLTLY
WLPPARWGDLSHLILPALTLSALYTAYIARLTRSGLVEVLRSDYIRTARAKGLRESVVLLRHALRGSILPVVSYSGPALA
FLLGGTIVVEKLFLIPGLGNFFIEAANARDSFIVVGVTLVVATLLIVLNLVVDIVYALIDPRIAYK
>Mature_306_residues
MLNFILRRLLFAIPVLLVVVTISFFLVRLAPGGPFMEERAYPPAVIEKLNAKYGLDKPLHEQYFNYMQRVVLHFDLGPST
RYLDRTVGDVIAQGLPNSMILGGTAYLTALVLGMGAGIVAALRQNSGVDYGAMAAAVLGVSVPNFVLGPLLVIVLSLTLY
WLPPARWGDLSHLILPALTLSALYTAYIARLTRSGLVEVLRSDYIRTARAKGLRESVVLLRHALRGSILPVVSYSGPALA
FLLGGTIVVEKLFLIPGLGNFFIEAANARDSFIVVGVTLVVATLLIVLNLVVDIVYALIDPRIAYK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=307, Percent_Identity=47.557003257329, Blast_Score=298, Evalue=2e-82,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=42.5806451612903, Blast_Score=222, Evalue=3e-59,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=36.2573099415205, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=34.7402597402597, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=28.2967032967033, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787761, Length=334, Percent_Identity=34.1317365269461, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787550, Length=262, Percent_Identity=28.6259541984733, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33228; Mature: 33228

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFILRRLLFAIPVLLVVVTISFFLVRLAPGGPFMEERAYPPAVIEKLNAKYGLDKPLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHH
EQYFNYMQRVVLHFDLGPSTRYLDRTVGDVIAQGLPNSMILGGTAYLTALVLGMGAGIVA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHH
ALRQNSGVDYGAMAAAVLGVSVPNFVLGPLLVIVLSLTLYWLPPARWGDLSHLILPALTL
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SALYTAYIARLTRSGLVEVLRSDYIRTARAKGLRESVVLLRHALRGSILPVVSYSGPALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
FLLGGTIVVEKLFLIPGLGNFFIEAANARDSFIVVGVTLVVATLLIVLNLVVDIVYALID
HHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRIAYK
CHHCCC
>Mature Secondary Structure
MLNFILRRLLFAIPVLLVVVTISFFLVRLAPGGPFMEERAYPPAVIEKLNAKYGLDKPLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHCCCCCCHH
EQYFNYMQRVVLHFDLGPSTRYLDRTVGDVIAQGLPNSMILGGTAYLTALVLGMGAGIVA
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHH
ALRQNSGVDYGAMAAAVLGVSVPNFVLGPLLVIVLSLTLYWLPPARWGDLSHLILPALTL
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SALYTAYIARLTRSGLVEVLRSDYIRTARAKGLRESVVLLRHALRGSILPVVSYSGPALA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH
FLLGGTIVVEKLFLIPGLGNFFIEAANARDSFIVVGVTLVVATLLIVLNLVVDIVYALID
HHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRIAYK
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]