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The map label for this gene is petD

Identifier: 37521487

GI number: 37521487

Start: 2039604

End: 2040083

Strand: Reverse

Name: petD

Synonym: gvip264

Alternate gene names: 37521487

Gene position: 2040083-2039604 (Counterclockwise)

Preceding gene: 37521488

Following gene: 37521486

Centisome position: 43.79

GC content: 59.58

Gene sequence:

>480_bases
ATGCCGCTAAAGCGCCCCGAACTGGACGATCCGGAAATCCGTGAGCTTCTTGAGCAAGGCATGGGCCACAACACTTACGG
TGAGCCCTTCTGGCCCAACGACATTCTGATTTTCGGCGTCGTTATCCTGGGAACCATCTTCGGCGTCATCGCCCTGGCCG
TGCTCGACCCGGCCAAGATGGGCGAACCCGCCGACCCGTTCAACACGCCCCTGCACATCCTGCCGGAGTGGTACTTCTAC
CCGGTCTTCCAAATTTTGCGCGTCGTGCCCAACAAGTTGCTGGGCGTCGTGCTGATGGCGGCGATTCCGATCGGTCTGGC
ACTGGTGCCGTTCATCGAGAACGTCAACAAGTTCCAGAACCCTTTCCGTCGCCCGCTTGCCACCGCCGTCTTCTTGATCG
GCACTGTGGTCACCATGTACCTGGGCATCGGTGCAATGATTCCCGACATTCCCAAGTCCCTGACCCTGGGCCTGTTCTAG

Upstream 100 bases:

>100_bases
TCGTTTTCATGCTGATGCACTTCTTGATGATCCGCAAGCAGGGCATCTCCGGTCCCCTGTAAGTGCGCCACCGTAGATTC
TCGATTAAGGAGAGAAAGAC

Downstream 100 bases:

>100_bases
ATCACCAACCGACTTTCAAACGAGGGGCGCAGGAATTTCCTGCGCCCCTTTTGCGTGGTCCCAAAAGTGCGCCCCGGGCG
CATCGGGGCCATAATGGAAG

Product: cytochrome b6-f complex subunit IV

Products: NA

Alternate protein names: 17 kDa polypeptide

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MPLKRPELDDPEIRELLEQGMGHNTYGEPFWPNDILIFGVVILGTIFGVIALAVLDPAKMGEPADPFNTPLHILPEWYFY
PVFQILRVVPNKLLGVVLMAAIPIGLALVPFIENVNKFQNPFRRPLATAVFLIGTVVTMYLGIGAMIPDIPKSLTLGLF

Sequences:

>Translated_159_residues
MPLKRPELDDPEIRELLEQGMGHNTYGEPFWPNDILIFGVVILGTIFGVIALAVLDPAKMGEPADPFNTPLHILPEWYFY
PVFQILRVVPNKLLGVVLMAAIPIGLALVPFIENVNKFQNPFRRPLATAVFLIGTVVTMYLGIGAMIPDIPKSLTLGLF
>Mature_158_residues
PLKRPELDDPEIRELLEQGMGHNTYGEPFWPNDILIFGVVILGTIFGVIALAVLDPAKMGEPADPFNTPLHILPEWYFYP
VFQILRVVPNKLLGVVLMAAIPIGLALVPFIENVNKFQNPFRRPLATAVFLIGTVVTMYLGIGAMIPDIPKSLTLGLF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family. PetD subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PETD_GLOVI (Q7NJB4)

Other databases:

- EMBL:   BA000045
- RefSeq:   NP_924864.1
- ProteinModelPortal:   Q7NJB4
- SMR:   Q7NJB4
- GeneID:   2600320
- GenomeReviews:   BA000045_GR
- NMPDR:   fig|251221.1.peg.1918
- HOGENOM:   HBG286085
- OMA:   PFIESVN
- ProtClustDB:   PRK13476
- BioCyc:   GVIO251221:GLL1918-MONOMER
- GO:   GO:0015979
- GO:   GO:0006810
- HAMAP:   MF_01344
- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005870
- Gene3D:   G3DSA:1.20.810.10
- PANTHER:   PTHR19271
- PIRSF:   PIRSF000033
- TIGRFAMs:   TIGR01156

Pfam domain/function: PF00032 Cytochrom_B_C; SSF81648 Cytochrome_b/b6_C

EC number: NA

Molecular weight: Translated: 17622; Mature: 17491

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1438fb9c)-; HASH(0x13eb62b8)-; HASH(0x1422afec)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKRPELDDPEIRELLEQGMGHNTYGEPFWPNDILIFGVVILGTIFGVIALAVLDPAKM
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHC
GEPADPFNTPLHILPEWYFYPVFQILRVVPNKLLGVVLMAAIPIGLALVPFIENVNKFQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFRRPLATAVFLIGTVVTMYLGIGAMIPDIPKSLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
>Mature Secondary Structure 
PLKRPELDDPEIRELLEQGMGHNTYGEPFWPNDILIFGVVILGTIFGVIALAVLDPAKM
CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHC
GEPADPFNTPLHILPEWYFYPVFQILRVVPNKLLGVVLMAAIPIGLALVPFIENVNKFQN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFRRPLATAVFLIGTVVTMYLGIGAMIPDIPKSLTLGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14621292