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The map label for this gene is ycf43 [C]

Identifier: 37521481

GI number: 37521481

Start: 2031828

End: 2032613

Strand: Reverse

Name: ycf43 [C]

Synonym: gvip261

Alternate gene names: 37521481

Gene position: 2032613-2031828 (Counterclockwise)

Preceding gene: 37521482

Following gene: 37521480

Centisome position: 43.63

GC content: 59.92

Gene sequence:

>786_bases
ATGACCGCTACGCGCCCCGACTTCGAACAAGAAGACAATCCGCCCGAGACCGACGACGCCCTCGACTCCAAGGACGAATT
TCCGGACGAGGTCGAGATGACCCTGGGGGAGCACCTCGAAGAGTTGCGCACCCGCCTCTTCTGGGCGCTTGGCACCTTTA
TCGCGGCCACTATCGGCTGTTTTATCTTCGTCAAACCGATCGTCGATCTGCTGCAGAAGCCGGCGGGCACGACGGTCAAA
TTCATCCAGACCATCCCAGGCGAATTTTTCTTTGTCTCGTTTAAAGTGGCGGCCTACAGCGGTCTGATGGTCGCGGCCCC
GATGATTCTCTATCAAATTGTGCGCTTCGTGCTGCCGGGGCTCAGTCGCCGCGAGCGCAAACTCATCCTGCCCATCGTGG
TCGGCTCCAGTGTGCTGTTCGTCGTGGGCGTCGTCTTTGCCTTTATGGTCCTGGCCCCGGCCGCCCTCAACTTTTTTGTG
AGCTACGGCGACGGCGTCGTCGATCAGACCTGGACGATCGAGCGCTATTTCGACTTGATGTTCGTGATGCTGATCAGCAC
CGGCATCGTCTTTCAGGTACCGATCTTGCAGGTGCTGCTCGGGGTGACGGGGATCGTCTCCTCCGAGCGGATGTTCTCGG
TCTGGCGCTATGTGAGCGTCTTCGCGGTGGTGCTGGGGGCCGTCGTCACCCCCTCGACCGATCCGCTCACCCAGACCTTT
CTAGCCGGGGCGGTGACAATCCTCTATTTTGGCGGCGCGGGCGCGGTCAAACTGATTGGCAAGTAA

Upstream 100 bases:

>100_bases
CGCTGCATCCGGGCGGTTACGACCCCGTACCGGAGCGCCGGTCGGTCCGTTAGACGACAGACCCGGGCGCTAGAATTGAG
AGCGAAGTGGCTCGACCGTT

Downstream 100 bases:

>100_bases
ACTGGGACGACCCATGGGCATTTCTCTCACTCCCGAACAGGAAGGCTTCGTTCTTAGCAAACTCCAGACCGGGCAGTACC
GCTCCGCCGAAGAACTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTATRPDFEQEDNPPETDDALDSKDEFPDEVEMTLGEHLEELRTRLFWALGTFIAATIGCFIFVKPIVDLLQKPAGTTVK
FIQTIPGEFFFVSFKVAAYSGLMVAAPMILYQIVRFVLPGLSRRERKLILPIVVGSSVLFVVGVVFAFMVLAPAALNFFV
SYGDGVVDQTWTIERYFDLMFVMLISTGIVFQVPILQVLLGVTGIVSSERMFSVWRYVSVFAVVLGAVVTPSTDPLTQTF
LAGAVTILYFGGAGAVKLIGK

Sequences:

>Translated_261_residues
MTATRPDFEQEDNPPETDDALDSKDEFPDEVEMTLGEHLEELRTRLFWALGTFIAATIGCFIFVKPIVDLLQKPAGTTVK
FIQTIPGEFFFVSFKVAAYSGLMVAAPMILYQIVRFVLPGLSRRERKLILPIVVGSSVLFVVGVVFAFMVLAPAALNFFV
SYGDGVVDQTWTIERYFDLMFVMLISTGIVFQVPILQVLLGVTGIVSSERMFSVWRYVSVFAVVLGAVVTPSTDPLTQTF
LAGAVTILYFGGAGAVKLIGK
>Mature_260_residues
TATRPDFEQEDNPPETDDALDSKDEFPDEVEMTLGEHLEELRTRLFWALGTFIAATIGCFIFVKPIVDLLQKPAGTTVKF
IQTIPGEFFFVSFKVAAYSGLMVAAPMILYQIVRFVLPGLSRRERKLILPIVVGSSVLFVVGVVFAFMVLAPAALNFFVS
YGDGVVDQTWTIERYFDLMFVMLISTGIVFQVPILQVLLGVTGIVSSERMFSVWRYVSVFAVVLGAVVTPSTDPLTQTFL
AGAVTILYFGGAGAVKLIGK

Specific function: Required For Correct Localization Of Precursor Proteins Bearing Signal Peptides With The Twin Arginine Conserved Motif S/T-R-R-X-F-L-K. This Sec-Independent Pathway Is Termed Tat For Twin-Arginine Translocation System. This System Mainly Transports Protei

COG id: COG0805

COG function: function code U; Sec-independent protein secretion pathway component TatC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatC family [H]

Homologues:

Organism=Escherichia coli, GI2367313, Length=218, Percent_Identity=33.9449541284404, Blast_Score=103, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002033
- InterPro:   IPR019820
- InterPro:   IPR019822 [H]

Pfam domain/function: PF00902 TatC [H]

EC number: NA

Molecular weight: Translated: 28702; Mature: 28571

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATRPDFEQEDNPPETDDALDSKDEFPDEVEMTLGEHLEELRTRLFWALGTFIAATIGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFVKPIVDLLQKPAGTTVKFIQTIPGEFFFVSFKVAAYSGLMVAAPMILYQIVRFVLPG
HHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
LSRRERKLILPIVVGSSVLFVVGVVFAFMVLAPAALNFFVSYGDGVVDQTWTIERYFDLM
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
FVMLISTGIVFQVPILQVLLGVTGIVSSERMFSVWRYVSVFAVVLGAVVTPSTDPLTQTF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LAGAVTILYFGGAGAVKLIGK
HHHHHHHHEECCCCCEEECCC
>Mature Secondary Structure 
TATRPDFEQEDNPPETDDALDSKDEFPDEVEMTLGEHLEELRTRLFWALGTFIAATIGC
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FIFVKPIVDLLQKPAGTTVKFIQTIPGEFFFVSFKVAAYSGLMVAAPMILYQIVRFVLPG
HHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
LSRRERKLILPIVVGSSVLFVVGVVFAFMVLAPAALNFFVSYGDGVVDQTWTIERYFDLM
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
FVMLISTGIVFQVPILQVLLGVTGIVSSERMFSVWRYVSVFAVVLGAVVTPSTDPLTQTF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LAGAVTILYFGGAGAVKLIGK
HHHHHHHHEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]