| Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
|---|---|
| Accession | NC_005125 |
| Length | 4,659,019 |
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The map label for this gene is ctpA [H]
Identifier: 37521094
GI number: 37521094
Start: 1643583
End: 1645028
Strand: Direct
Name: ctpA [H]
Synonym: glr1525
Alternate gene names: 37521094
Gene position: 1643583-1645028 (Clockwise)
Preceding gene: 37521093
Following gene: 37521095
Centisome position: 35.28
GC content: 67.5
Gene sequence:
>1446_bases ATGGCGAGACAGTGCTGGAACCGCTGGACGGGCTGGTGGTGGGGATTATGCTTGTGCGCAACGGGGATGCCGGTGTTTGC CCAGGGTGAGCCGCAACTGCCCGCGGCCACCGAGCCGCCGCGTATCGCCGCAAGCCGCTACCAGGCGGGGGCGGATCTGC AGACGGTGGTGGCGCTGTTGCAGCAGCAGGCCCTCGATGAGGGGGGGCGCACGGCGTCCCTCAGCAGCGAGCGCAGCTAC CGCGAACTGGTGGTCGCCCAGGAGACCGAGGGCAAGGGCCGCGATCCGAAGCTGGTCGAGTACGAGGTGATCACCAAGGT GCTCGGCAAGTACGGCGCCAAGGGCGACGCGCTGCTGACGCCTGAGCAGTTGCAGCGCGAGCGCCAGCGCGATCGGGCGA GTGTGTCGGTGACACCGGTGGGCGAAGGCATTGCCCAGGTGCAGCTCGCCTCCATTGGGTTCGGTTCTGCCTCCCAGGTG AGCCAGGCACTGCATCAGGCGGACCACAGCCGCGGGGTGATCCTTGATCTGCGTGGAGCCGGCGGCGAGGATGCCCAGTC GGTGGCGGATACAGCCCGGCTCTTTTTCCCGACCGGCGCTTCGCCGCTGGTGCAGACGGTCGGGGCGCGCGACAGCGTCC GGCGCTGGGACAGCAAAGTGCGGGCAGTGGCCGTCGATCTGCCGGTGGTGGTGCTCATCGACAAAAAGACGCGGGCCGGG GCGGAGGCGCTTGCCGCCCAACTCGGGCGCACCGGCCGCGCCCAGGTGCTGGGCACGCGCACGGCGGGGTCGGATCTGTT CAGCGAAAGTTTTGCGCTGCCCAGTGGGGCGGCGGTGCGGTTGGTGACCGGCCGCTGGCGCACCGGCGACGGTCGCGGCC TGGCCGAGGGAGTCGAGCCCACCGAACCGAGCGGCACAGACCCGCTGCCGCGGGCGGTCGAATTGCTCGCCTCCCAGCCG GGCCGGCCCCTGAAGCCCACGGTATTCCCGGCGCGCGGCGAAATCGGTGATAAAACCCTCGGATTCAACGCCGGCACGGG CGATCTGGGCCTGGCCGGGGCGGTCGAGTACTTCCGCGGCGGCGAGAGCAACGCCATGCGCCCGAGCGACGAGCTAAAAA TCTGGTTTGTCCCGGACTACATCGTCCTCAACTACAAGCCGTCCTCGTCGCTACTCAACTTTTTTGCCGACCGCATCTAT TCGACCGCCGCGAACACCGTCACCGACAAGGGCATCCGCATCGGTTCGGGCTACAACGACATCCTCGAAGCCTACGGCAA TCCGGGCACCGGCGGGTACAACGAACTGTTTCCGTTTCCGGAGCGCTCCCGGGCCAACCGCCCGGACCGCTACTACGTCA ATTACGATGCCATTGGAGTAAGTTTCGGCCTGGAGACCGGCACCAATGTCGTGCGTGAAATCGGCATCTACAAACCCGGC AGTTAA
Upstream 100 bases:
>100_bases AATCGAAAATGCTCCAAGACTTGCCCTAGTGGCTGACCTTCAGCTAAGCTGCTTGCAACCCCTACATCTAGAGTAGGGGA GCGCCTGGAGGGCCGCTGCG
Downstream 100 bases:
>100_bases CCGGCGCCCCCTGTGAAAGTCGCCCTCGTCCACGAGTACCTGATCAAGCAGGGCGGCTCGGAGAACGTGGTGGAGGCGCT CAAGGGGTTGTTTCCGGAGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MARQCWNRWTGWWWGLCLCATGMPVFAQGEPQLPAATEPPRIAASRYQAGADLQTVVALLQQQALDEGGRTASLSSERSY RELVVAQETEGKGRDPKLVEYEVITKVLGKYGAKGDALLTPEQLQRERQRDRASVSVTPVGEGIAQVQLASIGFGSASQV SQALHQADHSRGVILDLRGAGGEDAQSVADTARLFFPTGASPLVQTVGARDSVRRWDSKVRAVAVDLPVVVLIDKKTRAG AEALAAQLGRTGRAQVLGTRTAGSDLFSESFALPSGAAVRLVTGRWRTGDGRGLAEGVEPTEPSGTDPLPRAVELLASQP GRPLKPTVFPARGEIGDKTLGFNAGTGDLGLAGAVEYFRGGESNAMRPSDELKIWFVPDYIVLNYKPSSSLLNFFADRIY STAANTVTDKGIRIGSGYNDILEAYGNPGTGGYNELFPFPERSRANRPDRYYVNYDAIGVSFGLETGTNVVREIGIYKPG S
Sequences:
>Translated_481_residues MARQCWNRWTGWWWGLCLCATGMPVFAQGEPQLPAATEPPRIAASRYQAGADLQTVVALLQQQALDEGGRTASLSSERSY RELVVAQETEGKGRDPKLVEYEVITKVLGKYGAKGDALLTPEQLQRERQRDRASVSVTPVGEGIAQVQLASIGFGSASQV SQALHQADHSRGVILDLRGAGGEDAQSVADTARLFFPTGASPLVQTVGARDSVRRWDSKVRAVAVDLPVVVLIDKKTRAG AEALAAQLGRTGRAQVLGTRTAGSDLFSESFALPSGAAVRLVTGRWRTGDGRGLAEGVEPTEPSGTDPLPRAVELLASQP GRPLKPTVFPARGEIGDKTLGFNAGTGDLGLAGAVEYFRGGESNAMRPSDELKIWFVPDYIVLNYKPSSSLLNFFADRIY STAANTVTDKGIRIGSGYNDILEAYGNPGTGGYNELFPFPERSRANRPDRYYVNYDAIGVSFGLETGTNVVREIGIYKPG S >Mature_480_residues ARQCWNRWTGWWWGLCLCATGMPVFAQGEPQLPAATEPPRIAASRYQAGADLQTVVALLQQQALDEGGRTASLSSERSYR ELVVAQETEGKGRDPKLVEYEVITKVLGKYGAKGDALLTPEQLQRERQRDRASVSVTPVGEGIAQVQLASIGFGSASQVS QALHQADHSRGVILDLRGAGGEDAQSVADTARLFFPTGASPLVQTVGARDSVRRWDSKVRAVAVDLPVVVLIDKKTRAGA EALAAQLGRTGRAQVLGTRTAGSDLFSESFALPSGAAVRLVTGRWRTGDGRGLAEGVEPTEPSGTDPLPRAVELLASQPG RPLKPTVFPARGEIGDKTLGFNAGTGDLGLAGAVEYFRGGESNAMRPSDELKIWFVPDYIVLNYKPSSSLLNFFADRIYS TAANTVTDKGIRIGSGYNDILEAYGNPGTGGYNELFPFPERSRANRPDRYYVNYDAIGVSFGLETGTNVVREIGIYKPGS
Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 51550; Mature: 51419
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQCWNRWTGWWWGLCLCATGMPVFAQGEPQLPAATEPPRIAASRYQAGADLQTVVALL CCCHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH QQQALDEGGRTASLSSERSYRELVVAQETEGKGRDPKLVEYEVITKVLGKYGAKGDALLT HHHHHHCCCCEECCCCCCCHHHEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEC PEQLQRERQRDRASVSVTPVGEGIAQVQLASIGFGSASQVSQALHQADHSRGVILDLRGA HHHHHHHHHHHHCEEEEEECCCCHHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC GGEDAQSVADTARLFFPTGASPLVQTVGARDSVRRWDSKVRAVAVDLPVVVLIDKKTRAG CCCHHHHHHHHHHEEECCCCHHHHHHHCCHHHHHHHHHHHEEEEECCCEEEEEECCCCCC AEALAAQLGRTGRAQVLGTRTAGSDLFSESFALPSGAAVRLVTGRWRTGDGRGLAEGVEP HHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCCC TEPSGTDPLPRAVELLASQPGRPLKPTVFPARGEIGDKTLGFNAGTGDLGLAGAVEYFRG CCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCHHHHHHHHCC GESNAMRPSDELKIWFVPDYIVLNYKPSSSLLNFFADRIYSTAANTVTDKGIRIGSGYND CCCCCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHH ILEAYGNPGTGGYNELFPFPERSRANRPDRYYVNYDAIGVSFGLETGTNVVREIGIYKPG HHHHCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCC S C >Mature Secondary Structure ARQCWNRWTGWWWGLCLCATGMPVFAQGEPQLPAATEPPRIAASRYQAGADLQTVVALL CCHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHH QQQALDEGGRTASLSSERSYRELVVAQETEGKGRDPKLVEYEVITKVLGKYGAKGDALLT HHHHHHCCCCEECCCCCCCHHHEEEEECCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEC PEQLQRERQRDRASVSVTPVGEGIAQVQLASIGFGSASQVSQALHQADHSRGVILDLRGA HHHHHHHHHHHHCEEEEEECCCCHHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC GGEDAQSVADTARLFFPTGASPLVQTVGARDSVRRWDSKVRAVAVDLPVVVLIDKKTRAG CCCHHHHHHHHHHEEECCCCHHHHHHHCCHHHHHHHHHHHEEEEECCCEEEEEECCCCCC AEALAAQLGRTGRAQVLGTRTAGSDLFSESFALPSGAAVRLVTGRWRTGDGRGLAEGVEP HHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCEECCCCCCCCCCCCC TEPSGTDPLPRAVELLASQPGRPLKPTVFPARGEIGDKTLGFNAGTGDLGLAGAVEYFRG CCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCEECCCCCCCCCCHHHHHHHHCC GESNAMRPSDELKIWFVPDYIVLNYKPSSSLLNFFADRIYSTAANTVTDKGIRIGSGYND CCCCCCCCCCCEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHH ILEAYGNPGTGGYNELFPFPERSRANRPDRYYVNYDAIGVSFGLETGTNVVREIGIYKPG HHHHCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHCCCCCC S C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8034700; 8058761; 8590279; 8905231 [H]