Definition | Gloeobacter violaceus PCC 7421 chromosome, complete genome. |
---|---|
Accession | NC_005125 |
Length | 4,659,019 |
Click here to switch to the map view.
The map label for this gene is hemH
Identifier: 37520408
GI number: 37520408
Start: 893846
End: 894829
Strand: Reverse
Name: hemH
Synonym: gvip102
Alternate gene names: 37520408
Gene position: 894829-893846 (Counterclockwise)
Preceding gene: 37520411
Following gene: 37520407
Centisome position: 19.21
GC content: 60.16
Gene sequence:
>984_bases ATGGCTGAAGTCGGAGTGCTGTTGCTCAACCTGGGGGGGCCGGACAAACAAGAGGACGTCAGGCCTTTTCTGTATAACCT GTTTGCCGACCCGGAAATTATTCGCATTCCGGTGCCGCCCTTGCAAAAGCCGCTCGCCTGGTTGATTTCGACTTTGCGCG CTCCCAAATCGCGCAAGAATTATCAGGCCATCGGCGGCGGTTCGCCCCTCAGGGCGATCACCAACCAGCAGGGCCGGGTG CTCAAAAAAGCGCTCGCCGCCCGCGGACTCGACATCGAAGTCTACGTCGGTATGCGCTACTGGCACCCGTTTACCGAGGA AGCCGTGCGCAAAATCAAAGCCGACGGCATTCGCCGCCTGGTGCTTCTGCCCCTCTACCCGCAGTACTCGATTTCCACCA GCGGTTCGAGCTTCAAATTGCTCGACCAGATCTGGGCGCGCGATCCGTCCCTCAAAGCCATCGAGCGCATCACGATCAAC TCCTGGTACAGCCGCCCCGGCTACATCCGGGCGATGGGCGAGCGCGTGCGCGAGGGCCTCGACAAATTCGACAACCCCGA CGGGGTGCATATTCTTTTTTCCGCCCACGGTGTGCCCCGCACCTACGTCGATCAAGACGGCGATCCGTACCAGCGCCAGA CCGAGGAAACGGTCGACCTGGTCATGCAATCGCTTGGACGCCCCAACGCCCATTCGCTCGCCTATCAGAGCCGGGTCGGC CCGGTGGAGTGGCTGAAGCCCTACACAGAAGACACCATCAACGAACTGGCCCAAAAAGGGGTGCGCTCCCTGCTGGCGGT GCCGGTGAGCTTTATTTCCGAGCACATCGAGACCCTGCAAGAAATCGAGATCGAATACCGCGAAGTGGCTGAAGCTGCCG GCATTCACGACTTTCGCCGCGCCAAGGCCCTCAACGTCAACAAGACGTTCATCGACGATCTAGCCGAGATGGTGATCGAG AATCTGGGTGTCTACTCGCGCTAG
Upstream 100 bases:
>100_bases CAGGATCAGCGGCCGGGATCGCTTCTTGGGCGCGATGTCTTTTCGGGAAACCAAATCGGAGCTAGCCTGATTGAGGATCG TTGTGTAGTCAGGGTGGCGC
Downstream 100 bases:
>100_bases TTGGCGCAGTGCCTTGACTTAGAGCGCGCTCCAAGTTCTAAGGTGATCCCATACCTACCGCACTCACCATCCAGCAATTT TGCAGGAGCAACAACCATGA
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MAEVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIPVPPLQKPLAWLISTLRAPKSRKNYQAIGGGSPLRAITNQQGRV LKKALAARGLDIEVYVGMRYWHPFTEEAVRKIKADGIRRLVLLPLYPQYSISTSGSSFKLLDQIWARDPSLKAIERITIN SWYSRPGYIRAMGERVREGLDKFDNPDGVHILFSAHGVPRTYVDQDGDPYQRQTEETVDLVMQSLGRPNAHSLAYQSRVG PVEWLKPYTEDTINELAQKGVRSLLAVPVSFISEHIETLQEIEIEYREVAEAAGIHDFRRAKALNVNKTFIDDLAEMVIE NLGVYSR
Sequences:
>Translated_327_residues MAEVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIPVPPLQKPLAWLISTLRAPKSRKNYQAIGGGSPLRAITNQQGRV LKKALAARGLDIEVYVGMRYWHPFTEEAVRKIKADGIRRLVLLPLYPQYSISTSGSSFKLLDQIWARDPSLKAIERITIN SWYSRPGYIRAMGERVREGLDKFDNPDGVHILFSAHGVPRTYVDQDGDPYQRQTEETVDLVMQSLGRPNAHSLAYQSRVG PVEWLKPYTEDTINELAQKGVRSLLAVPVSFISEHIETLQEIEIEYREVAEAAGIHDFRRAKALNVNKTFIDDLAEMVIE NLGVYSR >Mature_326_residues AEVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIPVPPLQKPLAWLISTLRAPKSRKNYQAIGGGSPLRAITNQQGRVL KKALAARGLDIEVYVGMRYWHPFTEEAVRKIKADGIRRLVLLPLYPQYSISTSGSSFKLLDQIWARDPSLKAIERITINS WYSRPGYIRAMGERVREGLDKFDNPDGVHILFSAHGVPRTYVDQDGDPYQRQTEETVDLVMQSLGRPNAHSLAYQSRVGP VEWLKPYTEDTINELAQKGVRSLLAVPVSFISEHIETLQEIEIEYREVAEAAGIHDFRRAKALNVNKTFIDDLAEMVIEN LGVYSR
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499021, Length=326, Percent_Identity=38.9570552147239, Blast_Score=213, Evalue=1e-55, Organism=Homo sapiens, GI60499025, Length=326, Percent_Identity=38.9570552147239, Blast_Score=213, Evalue=2e-55, Organism=Escherichia coli, GI1786681, Length=324, Percent_Identity=34.2592592592593, Blast_Score=144, Evalue=7e-36, Organism=Saccharomyces cerevisiae, GI6324750, Length=325, Percent_Identity=37.8461538461538, Blast_Score=199, Evalue=7e-52, Organism=Drosophila melanogaster, GI17864156, Length=326, Percent_Identity=37.4233128834356, Blast_Score=218, Evalue=4e-57, Organism=Drosophila melanogaster, GI24651774, Length=256, Percent_Identity=37.109375, Blast_Score=163, Evalue=1e-40, Organism=Drosophila melanogaster, GI45552018, Length=167, Percent_Identity=40.7185628742515, Blast_Score=133, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_GLOVI (Q7NMC7)
Other databases:
- EMBL: BA000045 - RefSeq: NP_923785.1 - ProteinModelPortal: Q7NMC7 - SMR: Q7NMC7 - GeneID: 2599265 - GenomeReviews: BA000045_GR - NMPDR: fig|251221.1.peg.839 - HOGENOM: HBG697135 - OMA: LAPHFST - ProtClustDB: PRK00035 - BioCyc: GVIO251221:GLL0839-MONOMER - BRENDA: 4.99.1.1 - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 36993; Mature: 36862
Theoretical pI: Translated: 7.87; Mature: 7.87
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIPVPPLQKPLAWLISTLRAPKSRKN CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCC YQAIGGGSPLRAITNQQGRVLKKALAARGLDIEVYVGMRYWHPFTEEAVRKIKADGIRRL CEECCCCCCHHHHHCCHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHHHEE VLLPLYPQYSISTSGSSFKLLDQIWARDPSLKAIERITINSWYSRPGYIRAMGERVREGL EEEECCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH DKFDNPDGVHILFSAHGVPRTYVDQDGDPYQRQTEETVDLVMQSLGRPNAHSLAYQSRVG HHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC PVEWLKPYTEDTINELAQKGVRSLLAVPVSFISEHIETLQEIEIEYREVAEAAGIHDFRR CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH AKALNVNKTFIDDLAEMVIENLGVYSR HHHCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure AEVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIPVPPLQKPLAWLISTLRAPKSRKN CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCC YQAIGGGSPLRAITNQQGRVLKKALAARGLDIEVYVGMRYWHPFTEEAVRKIKADGIRRL CEECCCCCCHHHHHCCHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHHHEE VLLPLYPQYSISTSGSSFKLLDQIWARDPSLKAIERITINSWYSRPGYIRAMGERVREGL EEEECCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH DKFDNPDGVHILFSAHGVPRTYVDQDGDPYQRQTEETVDLVMQSLGRPNAHSLAYQSRVG HHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC PVEWLKPYTEDTINELAQKGVRSLLAVPVSFISEHIETLQEIEIEYREVAEAAGIHDFRR CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH AKALNVNKTFIDDLAEMVIENLGVYSR HHHCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 14621292