The gene/protein map for NC_005085 is currently unavailable.
Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

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The map label for this gene is ydfG [C]

Identifier: 34498020

GI number: 34498020

Start: 2766543

End: 2767265

Strand: Reverse

Name: ydfG [C]

Synonym: CV_2565

Alternate gene names: 34498020

Gene position: 2767265-2766543 (Counterclockwise)

Preceding gene: 34498022

Following gene: 34498019

Centisome position: 58.24

GC content: 68.6

Gene sequence:

>723_bases
ATGAACAAGCCCCTGATCGTGATCACCGGCGCGAGCTCCGGCATCGGCGCCGCCGCCGCCAAGCGGTTTTCCCAGGCAGG
CCACCCGCTGCTGCTGCTGGCGCGCCGCGTCGACAAGCTGGAGGCGCTGGAATTGCCGAACACCTTGTGCCGCCGGGTGG
ACGTGAGCGATGGCGCCCAGCTGCAGGCCGCGCAGGCCGAGGCTGAGGCGCGCTTCGGTCCTGCCGACGCCATCGTCAAC
AACGCCGGCGTGATGCTGCTGGGCGCGATGGCCAAGCAGGATCCCGACGAGTGGCAGCGCATGCTGGACGTCAACGTCAA
GGGCCTGCTCAACGGCATCCACGCGGTGCTGGCCGGCATGGTGGCGCGCGGCCGCGGCACCATCATCAACATCAGCTCCA
TCGCCGGGCGCAAGACCTTTCCCAACCACGTGGCCTACTGCGGCACCAAGTTCGCCGTGCACGCGATCTCGGAAAACCTG
CGCGAGGAAGTGGCCGCCAGCGGCGTGCGGGTGATCACCATCGCGCCGGGCGCGGTGGAAACCGAGCTCCTGGGCCATAC
CACCGACGAAGCGATCAAGGCCGGCTACCAGGAATGGAAGCAGCAGATGGGCGGCGTGCTGGAGGCGGATGACGTGGCCG
AGGCCATCGCCTACGCCTACGGCCAACCGCAGCGGGTGTGCGTACGCGAGATCGTGCTGGCGGCCACCGGGCAATCAGCC
TAA

Upstream 100 bases:

>100_bases
TTTCAGGCAGAGATTTTTATCATTTTTCAGTCGGCATGGCGGTAAATATACTGCATGGCATCTGTTTCGTATCGATAAAT
CTTATGGAAGGAGAGAGTCC

Downstream 100 bases:

>100_bases
GCGACTCGGGGCGGCTTCAGAGGTCGGCATAGGAAAGGGGCGGTCCGCAGCAGCGGCCCGCTCTTTGCATAGATATTCTC
ACTACGTAATAAGTGTAATT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNKPLIVITGASSGIGAAAAKRFSQAGHPLLLLARRVDKLEALELPNTLCRRVDVSDGAQLQAAQAEAEARFGPADAIVN
NAGVMLLGAMAKQDPDEWQRMLDVNVKGLLNGIHAVLAGMVARGRGTIINISSIAGRKTFPNHVAYCGTKFAVHAISENL
REEVAASGVRVITIAPGAVETELLGHTTDEAIKAGYQEWKQQMGGVLEADDVAEAIAYAYGQPQRVCVREIVLAATGQSA

Sequences:

>Translated_240_residues
MNKPLIVITGASSGIGAAAAKRFSQAGHPLLLLARRVDKLEALELPNTLCRRVDVSDGAQLQAAQAEAEARFGPADAIVN
NAGVMLLGAMAKQDPDEWQRMLDVNVKGLLNGIHAVLAGMVARGRGTIINISSIAGRKTFPNHVAYCGTKFAVHAISENL
REEVAASGVRVITIAPGAVETELLGHTTDEAIKAGYQEWKQQMGGVLEADDVAEAIAYAYGQPQRVCVREIVLAATGQSA
>Mature_240_residues
MNKPLIVITGASSGIGAAAAKRFSQAGHPLLLLARRVDKLEALELPNTLCRRVDVSDGAQLQAAQAEAEARFGPADAIVN
NAGVMLLGAMAKQDPDEWQRMLDVNVKGLLNGIHAVLAGMVARGRGTIINISSIAGRKTFPNHVAYCGTKFAVHAISENL
REEVAASGVRVITIAPGAVETELLGHTTDEAIKAGYQEWKQQMGGVLEADDVAEAIAYAYGQPQRVCVREIVLAATGQSA

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=31.8725099601594, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=34.3589743589744, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=30.8900523560209, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI4503817, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI7705925, Length=216, Percent_Identity=28.2407407407407, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI22507405, Length=205, Percent_Identity=30.7317073170732, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI50726952, Length=188, Percent_Identity=32.4468085106383, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4557649, Length=202, Percent_Identity=31.1881188118812, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI142976729, Length=235, Percent_Identity=26.3829787234043, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI150247226, Length=224, Percent_Identity=29.0178571428571, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI31542939, Length=221, Percent_Identity=27.6018099547511, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=33.5051546391753, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI166795268, Length=204, Percent_Identity=30.3921568627451, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI40254992, Length=219, Percent_Identity=27.3972602739726, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI32483357, Length=187, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI19743808, Length=215, Percent_Identity=27.906976744186, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI210032110, Length=224, Percent_Identity=24.5535714285714, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI223718074, Length=198, Percent_Identity=31.3131313131313, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI44680136, Length=183, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI44680133, Length=183, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI17738292, Length=183, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI157739938, Length=188, Percent_Identity=26.5957446808511, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI7705855, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=224, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI15277342, Length=235, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI226371731, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=186, Percent_Identity=30.1075268817204, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40548397, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI214010158, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI214010156, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI22758144, Length=186, Percent_Identity=29.0322580645161, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI7657478, Length=194, Percent_Identity=29.8969072164948, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI19923817, Length=187, Percent_Identity=24.0641711229947, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082100, Length=186, Percent_Identity=37.6344086021505, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787335, Length=217, Percent_Identity=28.110599078341, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786701, Length=179, Percent_Identity=28.4916201117318, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786812, Length=178, Percent_Identity=28.6516853932584, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787526, Length=195, Percent_Identity=28.7179487179487, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367175, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082160, Length=183, Percent_Identity=28.4153005464481, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1790717, Length=200, Percent_Identity=30.5, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=27.807486631016, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=230, Percent_Identity=30.8695652173913, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=229, Percent_Identity=30.1310043668122, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=225, Percent_Identity=28.8888888888889, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17567345, Length=190, Percent_Identity=27.3684210526316, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=29.1666666666667, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=225, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=192, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=228, Percent_Identity=24.5614035087719, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=256, Percent_Identity=26.171875, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=192, Percent_Identity=29.6875, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=27.319587628866, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=201, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=233, Percent_Identity=26.1802575107296, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=247, Percent_Identity=25.5060728744939, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=256, Percent_Identity=35.546875, Blast_Score=136, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=27.2251308900524, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=187, Percent_Identity=27.807486631016, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=33.6, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24641232, Length=250, Percent_Identity=31.6, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281364494, Length=251, Percent_Identity=33.0677290836653, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=32, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=34.5381526104418, Blast_Score=100, Evalue=6e-22,
Organism=Drosophila melanogaster, GI23397609, Length=228, Percent_Identity=32.8947368421053, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI21357041, Length=225, Percent_Identity=32, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644339, Length=228, Percent_Identity=29.8245614035088, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI116007234, Length=249, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI28571526, Length=233, Percent_Identity=29.6137339055794, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24663911, Length=249, Percent_Identity=29.718875502008, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648944, Length=239, Percent_Identity=28.8702928870293, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=32.1052631578947, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281364892, Length=193, Percent_Identity=32.1243523316062, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24648693, Length=252, Percent_Identity=30.1587301587302, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21355889, Length=252, Percent_Identity=30.1587301587302, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=214, Percent_Identity=27.5700934579439, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007238, Length=173, Percent_Identity=34.6820809248555, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=28.75, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640492, Length=193, Percent_Identity=28.4974093264249, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI116007232, Length=173, Percent_Identity=35.8381502890173, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21356301, Length=222, Percent_Identity=27.4774774774775, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355631, Length=168, Percent_Identity=27.3809523809524, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24644337, Length=161, Percent_Identity=29.1925465838509, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24584748, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076933, Length=184, Percent_Identity=28.804347826087, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355319, Length=185, Percent_Identity=28.6486486486486, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17737361, Length=235, Percent_Identity=26.3829787234043, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25289; Mature: 25289

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNKPLIVITGASSGIGAAAAKRFSQAGHPLLLLARRVDKLEALELPNTLCRRVDVSDGAQ
CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCH
LQAAQAEAEARFGPADAIVNNAGVMLLGAMAKQDPDEWQRMLDVNVKGLLNGIHAVLAGM
HHHHHHHHHHCCCCHHHHHCCCCHHEEEHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VARGRGTIINISSIAGRKTFPNHVAYCGTKFAVHAISENLREEVAASGVRVITIAPGAVE
HHCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
TELLGHTTDEAIKAGYQEWKQQMGGVLEADDVAEAIAYAYGQPQRVCVREIVLAATGQSA
HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNKPLIVITGASSGIGAAAAKRFSQAGHPLLLLARRVDKLEALELPNTLCRRVDVSDGAQ
CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCH
LQAAQAEAEARFGPADAIVNNAGVMLLGAMAKQDPDEWQRMLDVNVKGLLNGIHAVLAGM
HHHHHHHHHHCCCCHHHHHCCCCHHEEEHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
VARGRGTIINISSIAGRKTFPNHVAYCGTKFAVHAISENLREEVAASGVRVITIAPGAVE
HHCCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHH
TELLGHTTDEAIKAGYQEWKQQMGGVLEADDVAEAIAYAYGQPQRVCVREIVLAATGQSA
HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA