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The map label for this gene is rbsB [H]

Identifier: 34497977

GI number: 34497977

Start: 2715567

End: 2716559

Strand: Reverse

Name: rbsB [H]

Synonym: CV_2522

Alternate gene names: 34497977

Gene position: 2716559-2715567 (Counterclockwise)

Preceding gene: 34497986

Following gene: 34497974

Centisome position: 57.18

GC content: 63.44

Gene sequence:

>993_bases
ATGAACATTGCGACGGCTGCGGCAATCCGTTCGAGGATCTCATCGTGGGCGGCGCGCGCATTGGCGATCTGGATCGGGCT
TGTTCCGCTGCCGGCTTTGCCGGCGGAAATCGCGTATATCACCGCCAAGGCGGATTTGCCGTTCTGGGATACGGTGGGCA
AGGGTGTGAAAGCGGTGGCGGAAGCGAACGGCTATGCGTTTTCGGAGCTGGACAGCAAGCTCAGCGCGGAGATGCAGTTG
AACAATGTCCGCCAGGCCATCGATCGCCGCGTCGCCGGCATCGTGATTTCCCCGACCAATAGCAAATCGGCCGAGGAGGC
GCTCATTCTGGCCAGGCGGGCGAAGATCCCGGTGGCCATCGCCGATATCGGCGCCAGCGGCGGCGACTACGTCAGCTTCG
TCAAATCCGACAACTACCGCGGCGCATACGATGTGGGGACTGAGCTGGCGAAGGCAATGAAGGCGCAAAACTGGGCCAGC
GGCGCTTACGGCATGGTCACCATCGAGCTGTCGAGGAAGAACGGACAGGACCGCACCAACGGCTTTCGCGACGCGATGAA
GGACGCGGGTTTTCCGCGCGAGATCGTGCTCAGACAGATGAAGGATTACTCCGCCGAGGAAACATACCGCTATGTCAAGG
AGATGCTGGCCGCGCATCCGGGCCTGCGGGGATTCTTCATCGAAACCGACCAGCCGGTGGCGGGCGCGCTGCGGGCGATT
CGCGAAGCGGGCAAGGAGAAGCAGCTGCTTTTGGTTTCCTTTGACGCGATGCCCGATGTCGTTCGCCTGCTCAAAAGCGG
CGCGCTGGTCGCCGTGGGCATGCAGCAACCTTACCTGATGGGCAGCTCCGCGGCCGGCGCGCTGGTTTCCCGCTTGCGCG
GCCATCCGCCGGCGAAGGAAATCCTGGTGCCGGTGCTGGTGGCGACCGGCCGCAATGTGGACCAGTTGATGCCCGTCGCC
GCGCGGACGGTGTTCGGCAAACCGCTCAAGTGA

Upstream 100 bases:

>100_bases
CGGGCGGCCGGATGATGTGCGGGGGCTGGATTTTCAAGGATGCCGCGTTTGCCCGGCTAGAATAAAACCAGATTTACGAA
TCCATTCCCGGAGGCATGAG

Downstream 100 bases:

>100_bases
GAGGGCCTGGTTCTTCGGTTCGCAACAGGATTCGGACGGGCGGTCAGGGCATCATCCGGCCCATTGCGTCGTCATGGATC
AGGTCGCGGATGGTGGCGTT

Product: ribose ABC transporter substrate-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNIATAAAIRSRISSWAARALAIWIGLVPLPALPAEIAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQL
NNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPVAIADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQNWAS
GAYGMVTIELSRKNGQDRTNGFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAGALRAI
REAGKEKQLLLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSRLRGHPPAKEILVPVLVATGRNVDQLMPVA
ARTVFGKPLK

Sequences:

>Translated_330_residues
MNIATAAAIRSRISSWAARALAIWIGLVPLPALPAEIAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQL
NNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPVAIADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQNWAS
GAYGMVTIELSRKNGQDRTNGFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAGALRAI
REAGKEKQLLLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSRLRGHPPAKEILVPVLVATGRNVDQLMPVA
ARTVFGKPLK
>Mature_330_residues
MNIATAAAIRSRISSWAARALAIWIGLVPLPALPAEIAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQL
NNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPVAIADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQNWAS
GAYGMVTIELSRKNGQDRTNGFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAGALRAI
REAGKEKQLLLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSRLRGHPPAKEILVPVLVATGRNVDQLMPVA
ARTVFGKPLK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=263, Percent_Identity=28.8973384030418, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35490; Mature: 35490

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIATAAAIRSRISSWAARALAIWIGLVPLPALPAEIAYITAKADLPFWDTVGKGVKAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
EANGYAFSELDSKLSAEMQLNNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPVAI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCEEE
ADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQNWASGAYGMVTIELSRKNGQDRTN
EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHH
GFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAGALRAI
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
REAGKEKQLLLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSRLRGHPPAKE
HHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHHHCCCCCHHH
ILVPVLVATGRNVDQLMPVAARTVFGKPLK
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNIATAAAIRSRISSWAARALAIWIGLVPLPALPAEIAYITAKADLPFWDTVGKGVKAVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
EANGYAFSELDSKLSAEMQLNNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPVAI
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCEEE
ADIGASGGDYVSFVKSDNYRGAYDVGTELAKAMKAQNWASGAYGMVTIELSRKNGQDRTN
EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCHHH
GFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAGALRAI
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
REAGKEKQLLLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSRLRGHPPAKE
HHCCCCCEEEEEEECCHHHHHHHHHCCCEEEEECCCCEEECCCHHHHHHHHHCCCCCHHH
ILVPVLVATGRNVDQLMPVAARTVFGKPLK
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]