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The map label for this gene is ybbK [C]

Identifier: 33863567

GI number: 33863567

Start: 1388448

End: 1389362

Strand: Reverse

Name: ybbK [C]

Synonym: PMT1299

Alternate gene names: 33863567

Gene position: 1389362-1388448 (Counterclockwise)

Preceding gene: 33863569

Following gene: 161350043

Centisome position: 57.63

GC content: 53.33

Gene sequence:

>915_bases
GTGGAAGCGTTTCTTGGTTTGCCAGCTCTCTTGCTAGTTGCCTTGTTGGGAAGTGGCAGTGTCAAAATTACGAGTGGTGG
ACGCTCGCGCTTGGTGGAGCGGCTCGGCAAGTTCGATCGTGAACTGCAGCCTGGCCTTTCTTTTGTTCTCCCCATGGTTG
AAAAGGTGGTCAGTTACGAGTCGTTGAAGGAGAGAGTTTTGGATATTCCTCCTCAGCAATGCATCACTCGTGACAACGTT
TCGATCGAGGTGGATGCGGTGGTGTATTGGCAGCTACTTGAACACTCTCGTGCTTATTACTCGGTGGATAATCTGCAGGC
GGCGATGGTGAATCTCGTTCTCACTCAGATCCGAGCCGAGATGGGCAAGCTTGATCTTGACCAGACATTTACCACCCGTA
CAGAAGTGAACGAATGCCTTCTTAGGGAGTTGGATGAGGCCACAGATCCCTGGGGGGTCAAAGTCACGCGAGTGGAAATG
CGAGACATTGTTCCATCGCGAGGGGTGCAGCAAGCGATGGAACAGCAGATGACAGCAGAGAGGGAAAAACGTGCTGCCAT
TCTTCGTTCTGAGGGCGAGAAAGAGGCTCAGCTCAATGAGGCTCGTGGTCATGCTGAAGCCTTGGTATTAGATGCTCGCG
CTCAGCAGGAAGCCCTTTTACTAGAAGCTGAAGCCCAGGCAAAGCAGCAGTCAACCCTTGCTCGCGCCAAGGCGGAAGCC
GCCCTGGAGATTGCTCGGGCTTTGGAGGCCAGCCCCAGAGCAGAGGAGGCTTTGAGGCTTTTGTTGGCTAAAGAATGGAT
GGCTATGGGCGAGCAGATGGCTGCTGCACCAGCAGGAAGTGTCTTGATGGTTGATCCTCAAAGCCCAGCTGCTTTGCTTT
CGGCACTCAAGGCTTTTCAGAAATCAGATAGCTGA

Upstream 100 bases:

>100_bases
AGGGCTTTCTCTATCTACTTTGGAGAAGAGAAAGCTGTTTGGAAGGGCTTTGCCGTGGTTCGTTTACGGACCTAGGTTTT
GCCTACACAGGAAGAACATT

Downstream 100 bases:

>100_bases
GTTTGTTATGGCTGTTCGCTAGCTGGTTTAGCTCTCAAGCACTCGGCTAGGTCAGGGTTATTGGTCATGAGGTTCAAAGG
GTTCTTTTTTGTGAGTGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MEAFLGLPALLLVALLGSGSVKITSGGRSRLVERLGKFDRELQPGLSFVLPMVEKVVSYESLKERVLDIPPQQCITRDNV
SIEVDAVVYWQLLEHSRAYYSVDNLQAAMVNLVLTQIRAEMGKLDLDQTFTTRTEVNECLLRELDEATDPWGVKVTRVEM
RDIVPSRGVQQAMEQQMTAEREKRAAILRSEGEKEAQLNEARGHAEALVLDARAQQEALLLEAEAQAKQQSTLARAKAEA
ALEIARALEASPRAEEALRLLLAKEWMAMGEQMAAAPAGSVLMVDPQSPAALLSALKAFQKSDS

Sequences:

>Translated_304_residues
MEAFLGLPALLLVALLGSGSVKITSGGRSRLVERLGKFDRELQPGLSFVLPMVEKVVSYESLKERVLDIPPQQCITRDNV
SIEVDAVVYWQLLEHSRAYYSVDNLQAAMVNLVLTQIRAEMGKLDLDQTFTTRTEVNECLLRELDEATDPWGVKVTRVEM
RDIVPSRGVQQAMEQQMTAEREKRAAILRSEGEKEAQLNEARGHAEALVLDARAQQEALLLEAEAQAKQQSTLARAKAEA
ALEIARALEASPRAEEALRLLLAKEWMAMGEQMAAAPAGSVLMVDPQSPAALLSALKAFQKSDS
>Mature_304_residues
MEAFLGLPALLLVALLGSGSVKITSGGRSRLVERLGKFDRELQPGLSFVLPMVEKVVSYESLKERVLDIPPQQCITRDNV
SIEVDAVVYWQLLEHSRAYYSVDNLQAAMVNLVLTQIRAEMGKLDLDQTFTTRTEVNECLLRELDEATDPWGVKVTRVEM
RDIVPSRGVQQAMEQQMTAEREKRAAILRSEGEKEAQLNEARGHAEALVLDARAQQEALLLEAEAQAKQQSTLARAKAEA
ALEIARALEASPRAEEALRLLLAKEWMAMGEQMAAAPAGSVLMVDPQSPAALLSALKAFQKSDS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=187, Percent_Identity=38.5026737967914, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI38016911, Length=192, Percent_Identity=34.8958333333333, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI221316744, Length=168, Percent_Identity=35.7142857142857, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI21686995, Length=168, Percent_Identity=35.7142857142857, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI7657615, Length=160, Percent_Identity=26.25, Blast_Score=69, Evalue=7e-12,
Organism=Escherichia coli, GI1786697, Length=294, Percent_Identity=35.7142857142857, Blast_Score=200, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI32564147, Length=268, Percent_Identity=36.1940298507463, Blast_Score=164, Evalue=4e-41,
Organism=Caenorhabditis elegans, GI17569493, Length=192, Percent_Identity=31.25, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI193209764, Length=192, Percent_Identity=31.25, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17569499, Length=173, Percent_Identity=35.2601156069364, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71989948, Length=180, Percent_Identity=33.8888888888889, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=33.8888888888889, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71987612, Length=158, Percent_Identity=36.7088607594937, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25153583, Length=158, Percent_Identity=36.7088607594937, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71987621, Length=158, Percent_Identity=36.7088607594937, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17569497, Length=183, Percent_Identity=31.1475409836066, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI32566490, Length=153, Percent_Identity=33.9869281045752, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17570161, Length=173, Percent_Identity=33.5260115606936, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193210507, Length=173, Percent_Identity=33.5260115606936, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17570459, Length=158, Percent_Identity=36.7088607594937, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI45550506, Length=257, Percent_Identity=35.0194552529183, Blast_Score=164, Evalue=6e-41,
Organism=Drosophila melanogaster, GI45556022, Length=153, Percent_Identity=37.2549019607843, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24657857, Length=153, Percent_Identity=35.9477124183007, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281365664, Length=153, Percent_Identity=35.9477124183007, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484448, Length=153, Percent_Identity=35.9477124183007, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI62484274, Length=153, Percent_Identity=35.9477124183007, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI18860517, Length=167, Percent_Identity=32.3353293413174, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356845, Length=166, Percent_Identity=28.3132530120482, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281361631, Length=167, Percent_Identity=29.3413173652695, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI281361633, Length=171, Percent_Identity=30.9941520467836, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI28573263, Length=194, Percent_Identity=26.2886597938144, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 33480; Mature: 33480

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFLGLPALLLVALLGSGSVKITSGGRSRLVERLGKFDRELQPGLSFVLPMVEKVVSYE
CCCHHCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKERVLDIPPQQCITRDNVSIEVDAVVYWQLLEHSRAYYSVDNLQAAMVNLVLTQIRAE
HHHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKLDLDQTFTTRTEVNECLLRELDEATDPWGVKVTRVEMRDIVPSRGVQQAMEQQMTAE
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHH
REKRAAILRSEGEKEAQLNEARGHAEALVLDARAQQEALLLEAEAQAKQQSTLARAKAEA
HHHHHHHHHCCCCHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEIARALEASPRAEEALRLLLAKEWMAMGEQMAAAPAGSVLMVDPQSPAALLSALKAFQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
KSDS
CCCC
>Mature Secondary Structure
MEAFLGLPALLLVALLGSGSVKITSGGRSRLVERLGKFDRELQPGLSFVLPMVEKVVSYE
CCCHHCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKERVLDIPPQQCITRDNVSIEVDAVVYWQLLEHSRAYYSVDNLQAAMVNLVLTQIRAE
HHHHHHHCCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MGKLDLDQTFTTRTEVNECLLRELDEATDPWGVKVTRVEMRDIVPSRGVQQAMEQQMTAE
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCHHHHHHHHHHHHH
REKRAAILRSEGEKEAQLNEARGHAEALVLDARAQQEALLLEAEAQAKQQSTLARAKAEA
HHHHHHHHHCCCCHHHHHHHHCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEIARALEASPRAEEALRLLLAKEWMAMGEQMAAAPAGSVLMVDPQSPAALLSALKAFQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH
KSDS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]