| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33863559
Identifier: 33863559
GI number: 33863559
Start: 1377502
End: 1378734
Strand: Reverse
Name: 33863559
Synonym: PMT1291
Alternate gene names: NA
Gene position: 1378734-1377502 (Counterclockwise)
Preceding gene: 33863560
Following gene: 33863558
Centisome position: 57.19
GC content: 57.42
Gene sequence:
>1233_bases ATGACGGCCCTGTTTGTTGACTGCCCAACTGGTCTGGCTGGTGACATGCTCCTGGCCGCATTTTTGGATCTGGGTGTGCC TCGGGCCGTGATTGAGGCTCCCCTTGCAGGGCTTGGCCTTGAGCAGGGTTATGCCCTTACGGTCGCAGAGGACCGCAGCG CTGGCTTGAGGGGCCTGAGGTTATCCGTTGAAGGGATCGAATTGGAGCCTCCTCATCGGCTTTGGCATGACATCAGAGCG CTGATCATGGAGGCTGATTGGTCAGAACCTTTGCGCGCCAGGGTGTTGAGGGTGTTTAAGGCTTTGGCGGAAGCAGAGGC TGCGGTTCATGGTCACCCCATCGAGCAGGTGCATTTTCATGAAGTGGGCATGATCGATGCTTTGGTTGATGTGGTGGGTG TTTGTGCGGCTGTTGAGCACTTGGCTCCCGAACAGATTGTCTGCGCCGTACCTCCGGCGGGGCGAGGCAAGACGGCAACA GCTCATGGCTTCTTGCCGGTTCCGGTCCCGGCCGTTTTGGAACTAGCCCGAAGACATCAAATCTGCCTCGAGGTTGGTGA TGACCTCCCGGCTTGTGAGCTCACCACTCCGACGGGGCTTGCCTTGATGGCTGTGCTGGCAGAGCGCTTTGGTCAGCCTC CCTCGCTAAGAATCAACACGATTGGAGTGGGTTTGGGACACCGCACTCTTGATCGCCCAAACATCCTGCGAATCTGTGAG CTCGATGGTTTCGAGAGAGAGCGATCTGAAGAAGAGATGGCTGGTTTGAGATGGCAGCCGGTGGTTGTGCAGGAAGCCTG GATTGATGACGCCACGCCTGAGGACGTTGCCGTTTTCAGTGATCAGTTGCGGGATGCCGGAGCGTTGGATGTTGTTTCTG AGCAAGTACAGATGAAAAAAGGTCGCCAGGGGGTCAGTGTGAAGGCATTGGTGACTGCTGAACAGGCTCCTGGGTTGCGA GTGGTGTGGTTCTCTCAGGGAACGACTCTGGGGTTGCGGGAGCACTCTCATGGGCGGTGGTTGCTGCCTCGTCGTGGGGG ATCCTGTCCCACGCCATGGGGCTCAGTGCGTGTCAAGCAGGTACGGCGACCTCAAGGGATCCTCACTGTCAAGCCGGAGC ATGACGATCTCCTTCGCCTCAGTATTGAGACGGGCAATTCTCTGGAGGAGTTACGCCGTGAAGTGTTGTTGGCTTCGGAG GATTTTGTTGCAGATGAGGATTGGACATGGTGA
Upstream 100 bases:
>100_bases TAGGCGTTGTGATTGCTATTGGTTTGGCTGTCGACAAGCTGTATTGGCAGTCTGTTCATGTTTGGTTTGTTCAGTTTCCC AAGGGACTTCCTCAGGGGCA
Downstream 100 bases:
>100_bases TCTCAGGCTTGATTCGCAATGGGCGGGGTTTGAGGTTTTGGCTGGGCAAGGTGGCTCTCCCAGGTGGGTTTCGACTCTGG ATCACGCTCGCAAGTCTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MTALFVDCPTGLAGDMLLAAFLDLGVPRAVIEAPLAGLGLEQGYALTVAEDRSAGLRGLRLSVEGIELEPPHRLWHDIRA LIMEADWSEPLRARVLRVFKALAEAEAAVHGHPIEQVHFHEVGMIDALVDVVGVCAAVEHLAPEQIVCAVPPAGRGKTAT AHGFLPVPVPAVLELARRHQICLEVGDDLPACELTTPTGLALMAVLAERFGQPPSLRINTIGVGLGHRTLDRPNILRICE LDGFERERSEEEMAGLRWQPVVVQEAWIDDATPEDVAVFSDQLRDAGALDVVSEQVQMKKGRQGVSVKALVTAEQAPGLR VVWFSQGTTLGLREHSHGRWLLPRRGGSCPTPWGSVRVKQVRRPQGILTVKPEHDDLLRLSIETGNSLEELRREVLLASE DFVADEDWTW
Sequences:
>Translated_410_residues MTALFVDCPTGLAGDMLLAAFLDLGVPRAVIEAPLAGLGLEQGYALTVAEDRSAGLRGLRLSVEGIELEPPHRLWHDIRA LIMEADWSEPLRARVLRVFKALAEAEAAVHGHPIEQVHFHEVGMIDALVDVVGVCAAVEHLAPEQIVCAVPPAGRGKTAT AHGFLPVPVPAVLELARRHQICLEVGDDLPACELTTPTGLALMAVLAERFGQPPSLRINTIGVGLGHRTLDRPNILRICE LDGFERERSEEEMAGLRWQPVVVQEAWIDDATPEDVAVFSDQLRDAGALDVVSEQVQMKKGRQGVSVKALVTAEQAPGLR VVWFSQGTTLGLREHSHGRWLLPRRGGSCPTPWGSVRVKQVRRPQGILTVKPEHDDLLRLSIETGNSLEELRREVLLASE DFVADEDWTW >Mature_409_residues TALFVDCPTGLAGDMLLAAFLDLGVPRAVIEAPLAGLGLEQGYALTVAEDRSAGLRGLRLSVEGIELEPPHRLWHDIRAL IMEADWSEPLRARVLRVFKALAEAEAAVHGHPIEQVHFHEVGMIDALVDVVGVCAAVEHLAPEQIVCAVPPAGRGKTATA HGFLPVPVPAVLELARRHQICLEVGDDLPACELTTPTGLALMAVLAERFGQPPSLRINTIGVGLGHRTLDRPNILRICEL DGFERERSEEEMAGLRWQPVVVQEAWIDDATPEDVAVFSDQLRDAGALDVVSEQVQMKKGRQGVSVKALVTAEQAPGLRV VWFSQGTTLGLREHSHGRWLLPRRGGSCPTPWGSVRVKQVRRPQGILTVKPEHDDLLRLSIETGNSLEELRREVLLASED FVADEDWTW
Specific function: Unknown
COG id: COG1641
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0272 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002822 [H]
Pfam domain/function: PF01969 DUF111 [H]
EC number: NA
Molecular weight: Translated: 44813; Mature: 44682
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALFVDCPTGLAGDMLLAAFLDLGVPRAVIEAPLAGLGLEQGYALTVAEDRSAGLRGLR CCEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCHHHCCCCCCEEEEEECCCCCCCEEEE LSVEGIELEPPHRLWHDIRALIMEADWSEPLRARVLRVFKALAEAEAAVHGHPIEQVHFH EEEECEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH EVGMIDALVDVVGVCAAVEHLAPEQIVCAVPPAGRGKTATAHGFLPVPVPAVLELARRHQ HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ICLEVGDDLPACELTTPTGLALMAVLAERFGQPPSLRINTIGVGLGHRTLDRPNILRICE HHHCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCEEEEEE LDGFERERSEEEMAGLRWQPVVVQEAWIDDATPEDVAVFSDQLRDAGALDVVSEQVQMKK CCCCHHHCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH GRQGVSVKALVTAEQAPGLRVVWFSQGTTLGLREHSHGRWLLPRRGGSCPTPWGSVRVKQ CCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCCCCHHHHH VRRPQGILTVKPEHDDLLRLSIETGNSLEELRREVLLASEDFVADEDWTW HCCCCCEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TALFVDCPTGLAGDMLLAAFLDLGVPRAVIEAPLAGLGLEQGYALTVAEDRSAGLRGLR CEEEEECCCCCHHHHHHHHHHHCCCCHHHHHCCHHHCCCCCCEEEEEECCCCCCCEEEE LSVEGIELEPPHRLWHDIRALIMEADWSEPLRARVLRVFKALAEAEAAVHGHPIEQVHFH EEEECEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH EVGMIDALVDVVGVCAAVEHLAPEQIVCAVPPAGRGKTATAHGFLPVPVPAVLELARRHQ HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH ICLEVGDDLPACELTTPTGLALMAVLAERFGQPPSLRINTIGVGLGHRTLDRPNILRICE HHHCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCEEEEEE LDGFERERSEEEMAGLRWQPVVVQEAWIDDATPEDVAVFSDQLRDAGALDVVSEQVQMKK CCCCHHHCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH GRQGVSVKALVTAEQAPGLRVVWFSQGTTLGLREHSHGRWLLPRRGGSCPTPWGSVRVKQ CCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEECCCCCCCCCCCCCHHHHH VRRPQGILTVKPEHDDLLRLSIETGNSLEELRREVLLASEDFVADEDWTW HCCCCCEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12240834 [H]