Click here to switch to the map view.

The map label for this gene is pcr [H]

Identifier: 33863487

GI number: 33863487

Start: 1306022

End: 1307026

Strand: Reverse

Name: pcr [H]

Synonym: PMT1218

Alternate gene names: 33863487

Gene position: 1307026-1306022 (Counterclockwise)

Preceding gene: 33863488

Following gene: 33863483

Centisome position: 54.21

GC content: 50.85

Gene sequence:

>1005_bases
ATGGCTTCTTCTCAAGCTTCTCCAGGCACCGTCTTAATCACGGGCACGACCTCTGGCGTCGGGTTGTATGCCTGCAAGGC
ACTCGTCTATCGAGGCTGGCAGGTGATCACTGCAAATCGACATCCATTGCGAGCTGTTGCCGCTGCCGAGAGGGTTGGTA
TTCCAGCCGCTCAACTTACTCATCTAAGGATGGATTTGAGTGATCTCCAGAGCGTTCGCGATGGAGTCGAGACCCTTCTC
GGCTCGCTTGAGCAGCCGCTGGATGCGCTTGTTTGTAATGCCGCGGTCTATCAGCCCAGGCTGCGCAAGCCGAAACGCTC
AGCTCAGGGCTATGAGCTTTCGATGGCAACCAATCATTTCGGCCATTTCTTGCTGATTCAACTTTTGCTTGAGAACCTCG
GCAAAGCAAAAGTCTTTCAATCAGCGCGTGGCTCTTATTTGTCTGCTGCCCGAGTGGTCATTCTTGGCACAGTTACTGCT
AATTATAAGGAGCTTGGCGGCAAGATCCCGATCCCTGCACCGGCTGATCTGGGTAATCTTTCAGGTTTTGAACAAGGCTT
TCATGCGCCTATCAGTATGGCGAGTGGCAAAAGCTTCAAGCCTGGCAAGGCATATAAAGACAGCAAGCTCTGCAACATGA
TCACCACGCAGGAGCTTCACCGGCGTCTACATGAACAATCAGGGATTTTATTTACCTCTCTTTATCCTGGTTGTGTGGCT
GATACACCGTTATTCCGCTACACACCAAAAATCTTCCGGTTTTTGTTTCCTATATTCCAGAGGCTGATTACTGGTGGATA
TGTCACCCAGGCCAAGGCTGGGCAGCGGGTTGCACAGGTTGTAACTAATCCAGAGTTTGGTGTATCAGGTGTGCATTGGA
GTTGGGGCAATCGTCAGAAGAAGAACCGCGAAAGTTTCCGACAGGAACTATCGGAAAGGGCGACAGATCCCATCACCGCA
AAACGGGTCTGGGAATTGTCGATGAAATTGGTTGGTTTGACTTAA

Upstream 100 bases:

>100_bases
AGGGTCATCTGGCGCTGAGTTTTGTTTTGCTTGCGTCGAGAGTGAAGCTCAGCGCTTAGTTTTATAGCTATACCAACCTG
CTGCTCTCAAGGCTGCGTCG

Downstream 100 bases:

>100_bases
ATGATCAAGGGCTTTGCTCCTTTTAGAGGTTAGTCAAAGCCAAGTAGGTCAAAAATTTCACGATCTTTGAGAGGTTCCGC
TTCAAGAGGCTCAACATTAT

Product: protochlorophyllide oxidoreductase

Products: NA

Alternate protein names: PCR; NADPH-protochlorophyllide oxidoreductase; LPOR; POR [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MASSQASPGTVLITGTTSGVGLYACKALVYRGWQVITANRHPLRAVAAAERVGIPAAQLTHLRMDLSDLQSVRDGVETLL
GSLEQPLDALVCNAAVYQPRLRKPKRSAQGYELSMATNHFGHFLLIQLLLENLGKAKVFQSARGSYLSAARVVILGTVTA
NYKELGGKIPIPAPADLGNLSGFEQGFHAPISMASGKSFKPGKAYKDSKLCNMITTQELHRRLHEQSGILFTSLYPGCVA
DTPLFRYTPKIFRFLFPIFQRLITGGYVTQAKAGQRVAQVVTNPEFGVSGVHWSWGNRQKKNRESFRQELSERATDPITA
KRVWELSMKLVGLT

Sequences:

>Translated_334_residues
MASSQASPGTVLITGTTSGVGLYACKALVYRGWQVITANRHPLRAVAAAERVGIPAAQLTHLRMDLSDLQSVRDGVETLL
GSLEQPLDALVCNAAVYQPRLRKPKRSAQGYELSMATNHFGHFLLIQLLLENLGKAKVFQSARGSYLSAARVVILGTVTA
NYKELGGKIPIPAPADLGNLSGFEQGFHAPISMASGKSFKPGKAYKDSKLCNMITTQELHRRLHEQSGILFTSLYPGCVA
DTPLFRYTPKIFRFLFPIFQRLITGGYVTQAKAGQRVAQVVTNPEFGVSGVHWSWGNRQKKNRESFRQELSERATDPITA
KRVWELSMKLVGLT
>Mature_333_residues
ASSQASPGTVLITGTTSGVGLYACKALVYRGWQVITANRHPLRAVAAAERVGIPAAQLTHLRMDLSDLQSVRDGVETLLG
SLEQPLDALVCNAAVYQPRLRKPKRSAQGYELSMATNHFGHFLLIQLLLENLGKAKVFQSARGSYLSAARVVILGTVTAN
YKELGGKIPIPAPADLGNLSGFEQGFHAPISMASGKSFKPGKAYKDSKLCNMITTQELHRRLHEQSGILFTSLYPGCVAD
TPLFRYTPKIFRFLFPIFQRLITGGYVTQAKAGQRVAQVVTNPEFGVSGVHWSWGNRQKKNRESFRQELSERATDPITAK
RVWELSMKLVGLT

Specific function: Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide) [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily [H]

Homologues:

Organism=Homo sapiens, GI7706523, Length=324, Percent_Identity=27.1604938271605, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI186928839, Length=331, Percent_Identity=29.0030211480363, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI10190746, Length=341, Percent_Identity=28.7390029325513, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI166795268, Length=333, Percent_Identity=27.6276276276276, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193207620, Length=337, Percent_Identity=29.673590504451, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17532805, Length=332, Percent_Identity=26.5060240963855, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71992402, Length=318, Percent_Identity=26.4150943396226, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32565532, Length=243, Percent_Identity=27.1604938271605, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45553409, Length=329, Percent_Identity=27.6595744680851, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24647948, Length=329, Percent_Identity=27.6595744680851, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24647946, Length=329, Percent_Identity=27.6595744680851, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI20129347, Length=327, Percent_Identity=27.217125382263, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24586328, Length=323, Percent_Identity=27.8637770897833, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI22024069, Length=332, Percent_Identity=29.5180722891566, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR005979 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.3.1.33 [H]

Molecular weight: Translated: 36629; Mature: 36498

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSQASPGTVLITGTTSGVGLYACKALVYRGWQVITANRHPLRAVAAAERVGIPAAQLT
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHH
HLRMDLSDLQSVRDGVETLLGSLEQPLDALVCNAAVYQPRLRKPKRSAQGYELSMATNHF
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEEEHHHHH
GHFLLIQLLLENLGKAKVFQSARGSYLSAARVVILGTVTANYKELGGKIPIPAPADLGNL
HHHHHHHHHHHHCCHHHHHHHHCCCHHHHCEEEEEEECCCCHHHCCCCCCCCCCCCCCCC
SGFEQGFHAPISMASGKSFKPGKAYKDSKLCNMITTQELHRRLHEQSGILFTSLYPGCVA
CCHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHC
DTPLFRYTPKIFRFLFPIFQRLITGGYVTQAKAGQRVAQVVTNPEFGVSGVHWSWGNRQK
CCCHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH
KNRESFRQELSERATDPITAKRVWELSMKLVGLT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ASSQASPGTVLITGTTSGVGLYACKALVYRGWQVITANRHPLRAVAAAERVGIPAAQLT
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHH
HLRMDLSDLQSVRDGVETLLGSLEQPLDALVCNAAVYQPRLRKPKRSAQGYELSMATNHF
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEEEHHHHH
GHFLLIQLLLENLGKAKVFQSARGSYLSAARVVILGTVTANYKELGGKIPIPAPADLGNL
HHHHHHHHHHHHCCHHHHHHHHCCCHHHHCEEEEEEECCCCHHHCCCCCCCCCCCCCCCC
SGFEQGFHAPISMASGKSFKPGKAYKDSKLCNMITTQELHRRLHEQSGILFTSLYPGCVA
CCHHHCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHC
DTPLFRYTPKIFRFLFPIFQRLITGGYVTQAKAGQRVAQVVTNPEFGVSGVHWSWGNRQK
CCCHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH
KNRESFRQELSERATDPITAKRVWELSMKLVGLT
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9559561 [H]