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The map label for this gene is ycf39 [H]

Identifier: 33863443

GI number: 33863443

Start: 1264375

End: 1265337

Strand: Reverse

Name: ycf39 [H]

Synonym: PMT1173

Alternate gene names: 33863443

Gene position: 1265337-1264375 (Counterclockwise)

Preceding gene: 109150046

Following gene: 33863442

Centisome position: 52.48

GC content: 51.09

Gene sequence:

>963_bases
ATGCAGGTTCTGTTGGTTGGTGGAACTGGCACCCTTGGGCGGCAGATAGCTCGTCGTGCCATTGATGCTGGCCATCAGGT
CCGCTGCATGGTCCGAAAACCTCGTAAAGGGGCTTTCCTGCAGGAGTGGGGTTGCGAGCTCACCTGCGGCGATCTGCTTG
ATCCGGAGACTATTGATTACTCTCTTGATGGCATCGATGCTGTCATTGATGCGGCCACGAGCCGTCCCGATGATTCTGCG
AGTGTCTACACAACCGATTGGGATGGAAAGCTCAATCTGCTGAGGGCTTGTGAGAAAGCAGGAGTGACGCGCTACGTCTT
TCTTTCTTTGTTGGCAGCTGAGAAGCATCTCAACGTGCCACTGATGGACATCAAATTCTGCACCGAGAGGCTGTTGGCAG
ATTCGTCATTCGATTACACGATTTTGCAGGGTGTTGCCTTTATGCAGGGGTTGATCGGTCAAATCGCCATACCTGTTCTT
GAAAACCAGACGGTTTGGGTGAGTGAAACGCCTACAGCAGTTGCATACATGAATACCCAAGACGTCGCACGTTTTGCTGT
GGCTGCTTTGGAGCGTCCTGAAACGATCCGCCGCAGCTTTCCTGTCGTGGGTCCGAAGGCTTGGACCTCCGAAGAAATTG
TGCAATTTTGCGAAAAGTCCAGCAGTAAAACAGCCAAGGTGATTCGTGTGTCACCTTTTCTGATCGGATTGAGCCAGAGA
GTGGTCTCATTCTTTGAACAGTCAGTGAATATGGCTGAAAGGCTTGCTTTTGCAGAGGTCACTGGAGGAGGAATTGCTTT
GGATGCACCGATGGATGACACCTATTCCTGCTTTGGCTTGGATTCTTCGGAAACCACCCCTCTTGAAAGTTATATCTCCG
AGTACTACGACACGATCCTCAAGCGACTGCGTGAGATGGAGGCAGATCTCGACGAGGAAAGCAGGAAAAAGCTGCCTTTT
TAA

Upstream 100 bases:

>100_bases
GGTCTTGCAGGTGGTGCTCTCTTATTGAAGCTTCAGGGGGACTGAAGTTCGCAGACTGGAGTCGCTCGATATAGGCTCCT
TGCTTGTATTGAAGGGCCCT

Downstream 100 bases:

>100_bases
GGAATCCTCCATCCAATACTGGCGTGAGGATGGTTTATTTGTACTATTAGCAATATCTGTTTTGCTCCTGCTGGCATGTC
TGTTGTTCAAGTGAAAAACC

Product: chaperon-like protein for quinone binding in photosystem II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MQVLLVGGTGTLGRQIARRAIDAGHQVRCMVRKPRKGAFLQEWGCELTCGDLLDPETIDYSLDGIDAVIDAATSRPDDSA
SVYTTDWDGKLNLLRACEKAGVTRYVFLSLLAAEKHLNVPLMDIKFCTERLLADSSFDYTILQGVAFMQGLIGQIAIPVL
ENQTVWVSETPTAVAYMNTQDVARFAVAALERPETIRRSFPVVGPKAWTSEEIVQFCEKSSSKTAKVIRVSPFLIGLSQR
VVSFFEQSVNMAERLAFAEVTGGGIALDAPMDDTYSCFGLDSSETTPLESYISEYYDTILKRLREMEADLDEESRKKLPF

Sequences:

>Translated_320_residues
MQVLLVGGTGTLGRQIARRAIDAGHQVRCMVRKPRKGAFLQEWGCELTCGDLLDPETIDYSLDGIDAVIDAATSRPDDSA
SVYTTDWDGKLNLLRACEKAGVTRYVFLSLLAAEKHLNVPLMDIKFCTERLLADSSFDYTILQGVAFMQGLIGQIAIPVL
ENQTVWVSETPTAVAYMNTQDVARFAVAALERPETIRRSFPVVGPKAWTSEEIVQFCEKSSSKTAKVIRVSPFLIGLSQR
VVSFFEQSVNMAERLAFAEVTGGGIALDAPMDDTYSCFGLDSSETTPLESYISEYYDTILKRLREMEADLDEESRKKLPF
>Mature_320_residues
MQVLLVGGTGTLGRQIARRAIDAGHQVRCMVRKPRKGAFLQEWGCELTCGDLLDPETIDYSLDGIDAVIDAATSRPDDSA
SVYTTDWDGKLNLLRACEKAGVTRYVFLSLLAAEKHLNVPLMDIKFCTERLLADSSFDYTILQGVAFMQGLIGQIAIPVL
ENQTVWVSETPTAVAYMNTQDVARFAVAALERPETIRRSFPVVGPKAWTSEEIVQFCEKSSSKTAKVIRVSPFLIGLSQR
VVSFFEQSVNMAERLAFAEVTGGGIALDAPMDDTYSCFGLDSSETTPLESYISEYYDTILKRLREMEADLDEESRKKLPF

Specific function: Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Uses preferentially NADPH rather than NADH as an electron donor for its activity. The enzyme reductively cleaved Orange II and carboxy-Orange II, and can a

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NmrA-type oxidoreductase family. Azoreductase type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR008030 [H]

Pfam domain/function: PF05368 NmrA [H]

EC number: NA

Molecular weight: Translated: 35453; Mature: 35453

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLLVGGTGTLGRQIARRAIDAGHQVRCMVRKPRKGAFLQEWGCELTCGDLLDPETIDY
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCEEECCCCCCCCCCC
SLDGIDAVIDAATSRPDDSASVYTTDWDGKLNLLRACEKAGVTRYVFLSLLAAEKHLNVP
CCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
LMDIKFCTERLLADSSFDYTILQGVAFMQGLIGQIAIPVLENQTVWVSETPTAVAYMNTQ
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCEEEEECHH
DVARFAVAALERPETIRRSFPVVGPKAWTSEEIVQFCEKSSSKTAKVIRVSPFLIGLSQR
HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHH
VVSFFEQSVNMAERLAFAEVTGGGIALDAPMDDTYSCFGLDSSETTPLESYISEYYDTIL
HHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
KRLREMEADLDEESRKKLPF
HHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MQVLLVGGTGTLGRQIARRAIDAGHQVRCMVRKPRKGAFLQEWGCELTCGDLLDPETIDY
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCEEECCCCCCCCCCC
SLDGIDAVIDAATSRPDDSASVYTTDWDGKLNLLRACEKAGVTRYVFLSLLAAEKHLNVP
CCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
LMDIKFCTERLLADSSFDYTILQGVAFMQGLIGQIAIPVLENQTVWVSETPTAVAYMNTQ
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCEEEEECHH
DVARFAVAALERPETIRRSFPVVGPKAWTSEEIVQFCEKSSSKTAKVIRVSPFLIGLSQR
HHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHH
VVSFFEQSVNMAERLAFAEVTGGGIALDAPMDDTYSCFGLDSSETTPLESYISEYYDTIL
HHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
KRLREMEADLDEESRKKLPF
HHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12147495 [H]