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The map label for this gene is yqgF [C]

Identifier: 33862799

GI number: 33862799

Start: 575307

End: 575792

Strand: Direct

Name: yqgF [C]

Synonym: PMT0526

Alternate gene names: 33862799

Gene position: 575307-575792 (Clockwise)

Preceding gene: 33862798

Following gene: 33862800

Centisome position: 23.86

GC content: 53.91

Gene sequence:

>486_bases
ATGACGGCAACAAAACCCAGTCCCAAATCCATGCTTAGTCTGGATTTGGGGAAAAGACGCATCGGCCTAGCAGGATGCGA
TCCACTTGGAATCACGGTGAGTCCTCTACCACCTCTGCAGAGAAAAAGCTTCGAACGAGACCTAAAAGTGTTGCAGTGGC
ACTGCACTAGTCGCAAAGTAGAAGGCTTGGTCGTGGGTTTGCCGCTAGATGCCAAAGGTCTGCCCACAGATCAAGCACGA
CACTATGAGCGTTATGGACAACGCTTGGCGAGAGCTCTCAAGCTGCCTCTCGCTTTGGTTAATGAACACAGCAGTAGTTG
GGCTGCTGCTGAACGCTACAACTTGCAAGGCGATCGAAGTGGCCAGCTTGATAGCGCTGCGGCAGCACTTCTGCTCGAGC
AGTGGTTGCGAGAAGGTCCCGAACTGAAACCGGTCCACGTGGCGGCCCATCCAGTGAGTCAGGTGAACAGCGATAGTGGA
TCCTGA

Upstream 100 bases:

>100_bases
GTAACAAGTTGCTTCTTGGAGCTCGACCACTGCAATCGATGCTGGGGCGACTGCAACCCCAGCAACCACCTCTGCCTACT
CCAATCCTGGGCTGACATTA

Downstream 100 bases:

>100_bases
GCAAATCAACCTCAGCTCCAATGACTGCCCCGGGTCCAAACATCAATGGCGAGGTGCCAACGGTCTTAGTAAGAGATGAT
GAAGGGCGGGATCTGCTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAKGLPTDQAR
HYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSG
S

Sequences:

>Translated_161_residues
MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAKGLPTDQAR
HYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSG
S
>Mature_160_residues
TATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKVEGLVVGLPLDAKGLPTDQARH
YERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRSGQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PROMM (Q7V847)

Other databases:

- EMBL:   BX548175
- RefSeq:   NP_894359.1
- ProteinModelPortal:   Q7V847
- STRING:   Q7V847
- GeneID:   1729253
- GenomeReviews:   BX548175_GR
- KEGG:   pmt:PMT0526
- NMPDR:   fig|74547.1.peg.526
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   NEHSSTW
- ProtClustDB:   CLSK919441
- BioCyc:   PMAR74547:PMT0526-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17562; Mature: 17431

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKV
CCCCCCCCHHHHHHHCCCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
EGLVVGLPLDAKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRS
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
GQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGS
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCC
>Mature Secondary Structure 
TATKPSPKSMLSLDLGKRRIGLAGCDPLGITVSPLPPLQRKSFERDLKVLQWHCTSRKV
CCCCCCCHHHHHHHCCCCEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
EGLVVGLPLDAKGLPTDQARHYERYGQRLARALKLPLALVNEHSSSWAAAERYNLQGDRS
CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
GQLDSAAAALLLEQWLREGPELKPVHVAAHPVSQVNSDSGS
CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642