| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is thrS [H]
Identifier: 33862697
GI number: 33862697
Start: 474279
End: 476201
Strand: Direct
Name: thrS [H]
Synonym: PMT0424
Alternate gene names: 33862697
Gene position: 474279-476201 (Clockwise)
Preceding gene: 33862696
Following gene: 33862698
Centisome position: 19.67
GC content: 43.37
Gene sequence:
>1923_bases ATGCCTATTATTGCACTTCCAGACGGAAATAAAAAGAAGTTTGATCAACCCGTAACCATTATGGAGGTGGCCGAAAGCCT TGGGCCTGGATTAGCAAAGGCGGCTATCGCAGGCCGAGTCAATGGCGTATTGCTTGATACCTGTATCCCTATCGAGAAAG ACTCTGAAGTCAATATCATCACGGCGAAAGACCAAGATGGAATTGAGACTATTCGCCACTCATTCGCTCACTTGATTGGT CATGCCGTAAAGCAATTATATCCCGAAGCAAAAATGGCCATTGGTCCAGTTATTGAAGATGGATTTTATTATGATATTGC CTATGATCATCCTTTTACTCCTAAAGACTTGGAAGCGATTGAGGCTCGTATGAAAGAGCTGGTTAAGCTTGACTACGACG TTAATGTTGAAATAGTTTCAAAGGAAGAGGCTCGTAAGGAATTCGAAAAGCGATGCGAGCCCTACAAGATCGAAATCGTA GATGAAATTCCTGAGAATGAAATTATTAAGCTATATCGACATCAAGAATATACTGATATGTGTAGAGGTCCACATGTGCC TAACACAAGGCATTTGCGCACTTTCAAATTAATGAAAGTATCAGGTGCTTATTGGCGAGGTGATTCAAATAAAACAATGT TGCAGCGCATCTATGGCACGGCCTGGGGAAGTTCCAAAGAGCTAAAAGCTTATCTCAAGCGCCTTGAAGAAGCTGAAAAG CGCGATCATCGCAGGATCGCCAAGCAAATGTCTTTATTTCATACTCAAGAAGAAGCTCCTGGGATGATTTTCTGGCATGC CAAGGGTTGGGCTATTTATCAGGTTTTAGAGCAATATATTCGCGAGACCCTGAGCCTGCATGACTACCAAGAAATCCGAA CACCTCAGGTTGTAGACCGCTCCTTATGGGAGAAATCAGGCCATTGGGAGAAGTTCAAAGATGACATGTTTACAACGACA TCTGAAAATCGTGAATATGCCATAAAGCCTATGAATTGTCCCTGCCATGTACAGATCTTCAATCAAGGCCTAAAAAGTTA CCGTGACCTGCCAATTAGATTGGCAGAGTTTGGTTCATGTTTAAGGAATGAACCATCGGGTTCACTTCATGGTCTCATGC GCGTGCGCAATTTTGTTCAAGACGATGCTCACATCTTTTGTACTGAGCTTCAGGTTCAGGAAGAGGTTTCTAAGTTTATT GATCTAGTCTTTGAGGTTTACAGATCATTTGGGTTTGACTCGGTGCTTATAAAGTTATCAACCAGGCCCGAAAAGCGTGT TGGTAGTGATGAGATCTGGGACAAATCAGAGAAGGCCTTGTCCGATGCATTGGATGCTAAAGGTCTTGCATGGGACTTAT TGCCAGGGGAAGGTGCATTCTACGGGCCTAAAATTGAGTTTTCTTTAAAAGACTGTCTTGGTAGAGTTTGGCAATGTGGA ACGATCCAGGTTGACTTCTCGATGCCGGAACGTTTGGGAGCATCTTATGTAGCAGAAGACAGCCAGCGCAGAACACCAGT AATGTTGCATCGAGCAATTCTGGGTTCTTTTGAACGTTTTATCGGAATTCTGATCGAGCACTATGCTGGACGACTGCCTA TTTGGCTAGCACCTGTGCAGGTGGTAGTGATGGGGATTACAGACCGTAATGCTCAGGCTTGTCAGGATATTTGCAAGAAG TTATCAGCTCTAGAATATCGAACTGAAGTTGACTTAAGAAATGAAAAAATTGGTTTTAAAGTTCGCGAGCATACTCTTCA GCGTGTACCATTTTTAATCATTATTGGTGATAAAGAACAACAGAGTGGAGAGGTGGCTGTGCGCACTCGAGAGGGCAAGG ACTTTGGCAGTATGCCTTTGAAAGGCTTCACATCACTTCTGGATGAAGCAATTGCTCTTAAAGGTAGATCAGGTGTCTCT TGA
Upstream 100 bases:
>100_bases GCAAAATATTTTAGTCCAGCATTCAGAGGTGCAAGGATTGCTAGTGATATAGCTGATAAAATAGAACACTATTTCAACTC ATCAAAGAAAACTCCTTGCT
Downstream 100 bases:
>100_bases CAAATGTTGTCAATAGTTAGGTGATAATAATAATTGAGGAATACCTCGCTTTGGAGTGAATCTCTCTTCCGTCTGGATGA GAAGCTGAATAGCAAATTGG
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MPIIALPDGNKKKFDQPVTIMEVAESLGPGLAKAAIAGRVNGVLLDTCIPIEKDSEVNIITAKDQDGIETIRHSFAHLIG HAVKQLYPEAKMAIGPVIEDGFYYDIAYDHPFTPKDLEAIEARMKELVKLDYDVNVEIVSKEEARKEFEKRCEPYKIEIV DEIPENEIIKLYRHQEYTDMCRGPHVPNTRHLRTFKLMKVSGAYWRGDSNKTMLQRIYGTAWGSSKELKAYLKRLEEAEK RDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTT SENREYAIKPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIFCTELQVQEEVSKFI DLVFEVYRSFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCG TIQVDFSMPERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQVVVMGITDRNAQACQDICKK LSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTREGKDFGSMPLKGFTSLLDEAIALKGRSGVS
Sequences:
>Translated_640_residues MPIIALPDGNKKKFDQPVTIMEVAESLGPGLAKAAIAGRVNGVLLDTCIPIEKDSEVNIITAKDQDGIETIRHSFAHLIG HAVKQLYPEAKMAIGPVIEDGFYYDIAYDHPFTPKDLEAIEARMKELVKLDYDVNVEIVSKEEARKEFEKRCEPYKIEIV DEIPENEIIKLYRHQEYTDMCRGPHVPNTRHLRTFKLMKVSGAYWRGDSNKTMLQRIYGTAWGSSKELKAYLKRLEEAEK RDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTT SENREYAIKPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIFCTELQVQEEVSKFI DLVFEVYRSFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCG TIQVDFSMPERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQVVVMGITDRNAQACQDICKK LSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTREGKDFGSMPLKGFTSLLDEAIALKGRSGVS >Mature_639_residues PIIALPDGNKKKFDQPVTIMEVAESLGPGLAKAAIAGRVNGVLLDTCIPIEKDSEVNIITAKDQDGIETIRHSFAHLIGH AVKQLYPEAKMAIGPVIEDGFYYDIAYDHPFTPKDLEAIEARMKELVKLDYDVNVEIVSKEEARKEFEKRCEPYKIEIVD EIPENEIIKLYRHQEYTDMCRGPHVPNTRHLRTFKLMKVSGAYWRGDSNKTMLQRIYGTAWGSSKELKAYLKRLEEAEKR DHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDRSLWEKSGHWEKFKDDMFTTTS ENREYAIKPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSCLRNEPSGSLHGLMRVRNFVQDDAHIFCTELQVQEEVSKFID LVFEVYRSFGFDSVLIKLSTRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCGT IQVDFSMPERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQVVVMGITDRNAQACQDICKKL SALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQQSGEVAVRTREGKDFGSMPLKGFTSLLDEAIALKGRSGVS
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=617, Percent_Identity=38.2495948136143, Blast_Score=451, Evalue=1e-126, Organism=Homo sapiens, GI38570111, Length=620, Percent_Identity=38.3870967741935, Blast_Score=446, Evalue=1e-125, Organism=Homo sapiens, GI20070344, Length=638, Percent_Identity=34.9529780564263, Blast_Score=384, Evalue=1e-106, Organism=Escherichia coli, GI1788013, Length=632, Percent_Identity=62.0253164556962, Blast_Score=853, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984184, Length=640, Percent_Identity=37.8125, Blast_Score=454, Evalue=1e-128, Organism=Caenorhabditis elegans, GI71984192, Length=640, Percent_Identity=37.8125, Blast_Score=454, Evalue=1e-128, Organism=Saccharomyces cerevisiae, GI6322112, Length=628, Percent_Identity=36.9426751592357, Blast_Score=428, Evalue=1e-120, Organism=Saccharomyces cerevisiae, GI6322654, Length=398, Percent_Identity=37.9396984924623, Blast_Score=296, Evalue=5e-81, Organism=Drosophila melanogaster, GI24583839, Length=641, Percent_Identity=37.597503900156, Blast_Score=452, Evalue=1e-127, Organism=Drosophila melanogaster, GI24583842, Length=641, Percent_Identity=37.597503900156, Blast_Score=452, Evalue=1e-127, Organism=Drosophila melanogaster, GI28574141, Length=641, Percent_Identity=37.597503900156, Blast_Score=452, Evalue=1e-127,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 73272; Mature: 73141
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIIALPDGNKKKFDQPVTIMEVAESLGPGLAKAAIAGRVNGVLLDTCIPIEKDSEVNII CCEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEE TAKDQDGIETIRHSFAHLIGHAVKQLYPEAKMAIGPVIEDGFYYDIAYDHPFTPKDLEAI EECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEECCCEEEEEEECCCCCCHHHHHH EARMKELVKLDYDVNVEIVSKEEARKEFEKRCEPYKIEIVDEIPENEIIKLYRHQEYTDM HHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHH CRGPHVPNTRHLRTFKLMKVSGAYWRGDSNKTMLQRIYGTAWGSSKELKAYLKRLEEAEK HCCCCCCCCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDR HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SLWEKSGHWEKFKDDMFTTTSENREYAIKPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSC HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCHHHHHHHHH LRNEPSGSLHGLMRVRNFVQDDAHIFCTELQVQEEVSKFIDLVFEVYRSFGFDSVLIKLS HCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC TRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCG CCCCCCCCCCHHHCHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHCCC TIQVDFSMPERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQ EEEEECCCHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEE VVVMGITDRNAQACQDICKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQ EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCC QSGEVAVRTREGKDFGSMPLKGFTSLLDEAIALKGRSGVS CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PIIALPDGNKKKFDQPVTIMEVAESLGPGLAKAAIAGRVNGVLLDTCIPIEKDSEVNII CEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEEE TAKDQDGIETIRHSFAHLIGHAVKQLYPEAKMAIGPVIEDGFYYDIAYDHPFTPKDLEAI EECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEECCCEEEEEEECCCCCCHHHHHH EARMKELVKLDYDVNVEIVSKEEARKEFEKRCEPYKIEIVDEIPENEIIKLYRHQEYTDM HHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCHHHH CRGPHVPNTRHLRTFKLMKVSGAYWRGDSNKTMLQRIYGTAWGSSKELKAYLKRLEEAEK HCCCCCCCCCCEEEEEEEEECCCEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH RDHRRIAKQMSLFHTQEEAPGMIFWHAKGWAIYQVLEQYIRETLSLHDYQEIRTPQVVDR HHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH SLWEKSGHWEKFKDDMFTTTSENREYAIKPMNCPCHVQIFNQGLKSYRDLPIRLAEFGSC HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCHHHHHHHHH LRNEPSGSLHGLMRVRNFVQDDAHIFCTELQVQEEVSKFIDLVFEVYRSFGFDSVLIKLS HCCCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC TRPEKRVGSDEIWDKSEKALSDALDAKGLAWDLLPGEGAFYGPKIEFSLKDCLGRVWQCG CCCCCCCCCCHHHCHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHCCC TIQVDFSMPERLGASYVAEDSQRRTPVMLHRAILGSFERFIGILIEHYAGRLPIWLAPVQ EEEEECCCHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEE VVVMGITDRNAQACQDICKKLSALEYRTEVDLRNEKIGFKVREHTLQRVPFLIIIGDKEQ EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCC QSGEVAVRTREGKDFGSMPLKGFTSLLDEAIALKGRSGVS CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA