| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yjiG
Identifier: 30065414
GI number: 30065414
Start: 4354754
End: 4355215
Strand: Direct
Name: yjiG
Synonym: S4445
Alternate gene names: 30065414
Gene position: 4354754-4355215 (Clockwise)
Preceding gene: 30065413
Following gene: 30065415
Centisome position: 94.68
GC content: 53.25
Gene sequence:
>462_bases ATGACAACTCAGGTCCGCAAAAACGTCATGGATATGTTTATCGATGGCGCGCGCCGTGGCTTTACTATCGCCACGACCAA CCTGCTGCCAAACGTGGTGATGGCGTTTGTCATCATTCAGGCGCTGAAAATTACCGGCCTGCTCGACTGGGTGGGGCATA TCTGTGAACCCGTAATGGCGCTGTGGGGATTACCCGGTGAAGCGGCAACCGTCCTTTTAGCCGCATTAATGAGTATGGGC GGCGCAGTCGGTGTTGCCGCCAGTCTGGCAACCGCTGACGCATTAACCGGCCACGATGTCACCGTTTTACTGCCCGCAAT GTATTTAATGGGCAACCCGGTGCAAAATGTCGGTCGCTGCCTGGGGACAGCCGAAGTGAATGCCAAATATTACCCGCATA TCATTACGGTCTGCGTGATTAACGCATTGCTGTCGATCTGGGTTATGCAGCTTATTGTTTAA
Upstream 100 bases:
>100_bases CTTTAGCCGTCATCCTGGTGTTTAAATTTGTCGGAGCCAACATTTTGCGCGTCTGGCTTAACTTCGAAGAACGTCGCAAC CCAACGCAAGGAGCGCAAGC
Downstream 100 bases:
>100_bases CAAGGAGTTACCATGATTGATTATACCGCAGCCGGTTTTACCCTGCTGCAGGGAGCGCATTTGTATGCGCCGGAAGATCG GGGAATTTGCGATGTCCTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMG GAVGVAASLATADALTGHDVTVLLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV
Sequences:
>Translated_153_residues MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMG GAVGVAASLATADALTGHDVTVLLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV >Mature_152_residues TTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGG AVGVAASLATADALTGHDVTVLLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV
Specific function: Unknown
COG id: COG0700
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the spmB family [H]
Homologues:
Organism=Escherichia coli, GI1790785, Length=153, Percent_Identity=99.3464052287582, Blast_Score=304, Evalue=2e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011642 [H]
Pfam domain/function: PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 16252; Mature: 16121
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 6.5 %Met (Translated Protein) 8.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMA CCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWGLPGEAATVLLAALMSMGGAVGVAASLATADALTGHDVTVLLPAMYLMGNPVQNVGRC HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH LGTAEVNAKYYPHIITVCVINALLSIWVMQLIV HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure TTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKITGLLDWVGHICEPVMA CHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LWGLPGEAATVLLAALMSMGGAVGVAASLATADALTGHDVTVLLPAMYLMGNPVQNVGRC HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHH LGTAEVNAKYYPHIITVCVINALLSIWVMQLIV HCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]