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The map label for this gene is xylF

Identifier: 30065148

GI number: 30065148

Start: 4061432

End: 4062424

Strand: Reverse

Name: xylF

Synonym: S4159

Alternate gene names: 30065148

Gene position: 4062424-4061432 (Counterclockwise)

Preceding gene: 30065152

Following gene: 30065147

Centisome position: 88.33

GC content: 43.3

Gene sequence:

>993_bases
ATGAAAATAAAGAACATTCTACTCACCCTTTGCACCTCACTTCTGCTTACCAACGTTGCGGCACACGCCAAAGAAGTCAA
AATAGGTATGGCGATTGATGATCTCCGTCTTGAACGCTGGCAAAAAGATCGAGATATTTTTGTGAAAAAGGCAGAATCTC
TCGGTGCGAAAGTATTTGTACAGTCTGCAAATGGCAATGAAGAAACACAAATGTCGCAGATTGAAAACATGATTAACCGG
GGTGTCGATGTTCTTGTCATTATTCCGTATAACGGTCAGGTATTAAGTAACGTTGTAAAAAAAGCCAAACAAGAAGGTAT
TAAAGTATTAGCTTACGACCGTATGATTAACGATGCGGATATCGATTTTTATATTTCTTTCGATAACGAAAAAGTCGGTG
AACTGCAGGCAAAAGCCTTGGTCGATATTGTTCCGCAAGGTAATTACTTCCTGATGGGCGGCTCGCCGGTAGATAACAAC
GCCAAGCTGTTCCGCGCCGGACAAATGAAAGTGTTAAAACCTTACGTTGATTCTGGAAAAATTAAAGTCGTTGGTGACCA
ATGGGTTGATGGCTGGTTACCGGAAAACGCATTGAAAATTATGGAAAACGCGCTAACCGCCAATAATAACAAAATTGATG
CTGTAGTTGCCTCAAACGATGCCACCGCAGGTGGGGCAATTCAGGCATTAAGCGCGCAAGGTTTATCAGGGAAAGTAGCA
ATTTCCGGCCAGGATGCGGATCTCGCAGGTATTAAACGTATTGCTGCCGGTACGCAAACTATGACGGTGTATAAACCTAT
TACATTGCTGGCAAATACTGCCGCAGAAATTGCCGTTGAATTGGGCAATGGTCAGGAGCCAAAAGCAGATACCTCACTGA
ATAATGGCCTGAAAGATGTCCCCTCCCGCCTCCTGACACCGATCGATGTGAATAAAAACAACATCAAAGATACGGTAATT
AAAGACGGATTCCACAAAGAGAGCGAGCTGTAA

Upstream 100 bases:

>100_bases
GTAATTGTTTTCCCCTGTTTAGTTGCTAAAAATTGGTTACGTTTATCGCGGTGATTGTTACTTATTAAAGCTGTCCTCTA
ACTACAGAAGGCCCTACACC

Downstream 100 bases:

>100_bases
GCGTTACGCCCCGGCGCGGAGCGGGGGCGTGATTTCTCTCCATGCCGCGTGAATGAATTGGCTTAGGTGGAGTCGTTATG
CCTTATCTACTTGAAATGAA

Product: D-xylose transporter subunit XylF

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR
GVDVLVIIPYNGQVLSNVVKKAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVI
KDGFHKESEL

Sequences:

>Translated_330_residues
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR
GVDVLVIIPYNGQVLSNVVKKAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVI
KDGFHKESEL
>Mature_330_residues
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINR
GVDVLVIIPYNGQVLSNVVKKAKQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN
AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVI
KDGFHKESEL

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=330, Percent_Identity=99.3939393939394, Blast_Score=661, Evalue=0.0,
Organism=Escherichia coli, GI1790526, Length=261, Percent_Identity=25.6704980842912, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 35719; Mature: 35719

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKKAKQEGIKVLAYDRMINDAD
ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGK
EEEEEEECCCCHHHHHHHHHEEEECCCCEEEECCCCCCCCCEEEECCCEEEECCCCCCCC
IKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCCCCCCEEE
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDV
ECCCCCCHHHHHHHHCCCCEEEEECHHHHHHCCHHHEEEECCCCCCCCCCCCHHCCHHHH
PSRLLTPIDVNKNNIKDTVIKDGFHKESEL
HHHHCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFV
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCEEEEE
QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKKAKQEGIKVLAYDRMINDAD
ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGK
EEEEEEECCCCHHHHHHHHHEEEECCCCEEEECCCCCCCCCEEEECCCEEEECCCCCCCC
IKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCCCCCCEEE
ISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPKADTSLNNGLKDV
ECCCCCCHHHHHHHHCCCCEEEEECHHHHHHCCHHHEEEECCCCCCCCCCCCHHCCHHHH
PSRLLTPIDVNKNNIKDTVIKDGFHKESEL
HHHHCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]