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The map label for this gene is yibH

Identifier: 30065129

GI number: 30065129

Start: 4037809

End: 4038894

Strand: Direct

Name: yibH

Synonym: S4137

Alternate gene names: 30065129

Gene position: 4037809-4038894 (Clockwise)

Preceding gene: 30065128

Following gene: 30065130

Centisome position: 87.79

GC content: 52.21

Gene sequence:

>1086_bases
ATGGATCTATTGATTGTTTTAACTTACGTGGCGCTGGCGACGGCGGCGCTGGGAGGCGTGTTTCTGGTGAGTGGTTTGAT
TTTGTTGATGAACTACAACCACCCTTACACTTTTACCGCGCAAAAGGCAGTGATAGCGATCCCTATCACGCCACAGGTGA
CGGGAATTGTTACTGAAGTCACTGACAAGAATAATCAGCTTATTCAAAAGGGCGAGGTGCTTTTTAAGCTCGACCCGGTT
CGTTACCAGGCGCGAGTTGACAGACTTCAGGCTGACCTGATGACGGCGACGCATAATATAAAGACGCTGCGTGCGCAGCT
CACTGAAGCGCAGGCCAACACCACCCAGGTTTCAGCGGAGCGCGACCGTCTGTTTAAAAATTATCAACGTTACCTGAAAG
GCAGCCAGGCGGCGGTGAATCCGTTCTCGGAACGTGACATCGACGATGCGCGGCAAAATTTCCTCGCGCAGGATGCGTTA
GTGAAAGGCTCGGTGGCGGAGCAGGCGCAGATCCAGAGTCAGCTCGACAGTATGGTCAACGGCGAGCAATCGCAGATTGT
GAGCTTAAGAGCGCAACTTACTGAAGCAAAATATAATCTTGAGCAGACTGTCATTCGCGCACCAAGCAATGGCTACGTCA
CTCAGGTACTGATCCGCCCAGGTACATACGCAGCTGCCTTGCCGCTGCGTCCGGTGATGGTCTTCATCCCCGAGCAAAAA
CGGCAAATTGTCGCCCAATTTCGGCAAAACTCGCTGTTACGTCTGAAACCTGGCGATGATGCGGAAGTGGTGTTTAACGC
GCTACCTGGGCAGGTGTTCCACGGCAAATTGACTAGTATTTTACCTGTCGTGCCAGGCGGTTCTTATCAGGCGCAGGGGG
TATTGCAATCATTAACGGTCGTTCCCGGCACGGACGGTGTGCTGGGAACCATTGAACTGGACCCTAACGATGATATCGAT
GCCTTACCCGACGGCATCTACGCCCAGGTGGCGGTTTACTCCGACCATTTCAGCCATGTTTCGGTGATGCGGAAAGTGCT
GCTAAGAATGACCAGTTGGATGCATTATCTTTATTTGGATCATTGA

Upstream 100 bases:

>100_bases
AACCGGAAATCGCCGCACTTTCTGACCGAATTTCCCGGCTGGAGCATCAACTCGCCGCCGAGAAAAAGACTGACTATTCC
ACGTTCCCGGAGATCTAATT

Downstream 100 bases:

>100_bases
GACTTATATCACCTGTGTTTTGCGTGAGCCTGAGCCATACTGATATTTTTCCTCGCACAAAGGACTCGGCATGAAACTCG
TCGGTAGCTACACCAGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPV
RYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDAL
VKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQK
RQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDID
ALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Sequences:

>Translated_361_residues
MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPV
RYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDAL
VKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQK
RQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDID
ALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH
>Mature_361_residues
MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPV
RYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDAL
VKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQK
RQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDID
ALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790024, Length=378, Percent_Identity=95.5026455026455, Blast_Score=723, Evalue=0.0,
Organism=Escherichia coli, GI1790012, Length=378, Percent_Identity=74.0740740740741, Blast_Score=578, Evalue=1e-166,
Organism=Escherichia coli, GI1790519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87081951, Length=275, Percent_Identity=24, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788711, Length=238, Percent_Identity=22.6890756302521, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 39917; Mature: 39917

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEV
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEEECCCCCCEEEEEE
TDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAE
CCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVN
HHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQK
CCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCEEEECCCCEEEEEECCHH
RQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTV
HHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHEE
VPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLD
CCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEC
H
C
>Mature Secondary Structure
MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEV
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCEEEEEECCCCCCEEEEEE
TDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAE
CCCCCHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
RDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVN
HHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQK
CCHHHHHHHHHHHHHHHHCHHHHEEECCCCCCEEEEEECCCCEEEECCCCEEEEEECCHH
RQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGKLTSILPVVPGGSYQAQGVLQSLTV
HHHHHHHHHCCEEEECCCCCHHHHEECCCCCCCCCCHHHHEEECCCCCCHHHHHHHHHEE
VPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLD
CCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEEEC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]