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The map label for this gene is rbsD

Identifier: 30064946

GI number: 30064946

Start: 3830819

End: 3831238

Strand: Reverse

Name: rbsD

Synonym: S3939

Alternate gene names: 30064946

Gene position: 3831238-3830819 (Counterclockwise)

Preceding gene: 30064947

Following gene: 30064945

Centisome position: 83.3

GC content: 46.9

Gene sequence:

>420_bases
ATGAAAAAAGGCACCGTTCTTAATTCTGATATTTCATCGGTGATCTCCCGTCTGGGACATACCGATACGCTGGTGGTGTG
TGATGCTGGTTTACCCATCCCCAAAAGTACAACGCGTATCGATATGGCATTAACCCAAGGTGTACCTTCTTTTATGCAGG
TGCTGGGCGTCGTCACAAATGAAATGCAGGTCGAGGCTGCCATTATCGCGGAAGAGATCAAACAACATAATCCGCAACTC
CACGAAACGTTGCTCACTCACCTTGAGCAGCTGCAAAAACACCAGGGAAATACCATTGAAATTCGTTACACCACGCATGA
ACAATTCAAACAACAAACCGCAGAAAGTCAGGCGGTAATTCGCAGCGGAGAATGTTCTCCGTATGCGAATATCATTCTCT
GTGCTGGCGTGACGTTCTGA

Upstream 100 bases:

>100_bases
TTTCGAGGTTGATCACATTTCCGTAACGTCACGATGGTTTTCCCAACTCAGTCAGGATTAAGCTGCGGATCAGCGAAACG
TTTCGCTGATGGAGAAAAAA

Downstream 100 bases:

>100_bases
GGCCGTCATGGAAGCATTACTTCAGCTTAAAGGCATCGATAAAGCCTTCCCGGGCGTAAAAGCCCTCTCGGGCGCAGCGT
TAAATGTCTATCCGGGCCGT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQL
HETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF

Sequences:

>Translated_139_residues
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQL
HETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF
>Mature_139_residues
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQL
HETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=99.2805755395683, Blast_Score=285, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 15284; Mature: 15284

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN
CCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
EMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
RSGECSPYANIILCAGVTF
HCCCCCCCCCEEEECCCCC
>Mature Secondary Structure
MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTN
CCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHH
EMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHH
RSGECSPYANIILCAGVTF
HCCCCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA