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The map label for this gene is rbsC

Identifier: 30064943

GI number: 30064943

Start: 3827560

End: 3828525

Strand: Reverse

Name: rbsC

Synonym: S3934

Alternate gene names: 30064943

Gene position: 3828525-3827560 (Counterclockwise)

Preceding gene: 30064944

Following gene: 30064942

Centisome position: 83.24

GC content: 53.0

Gene sequence:

>966_bases
ATGATAACCCAGACTGTCTCTGGTCGCCGTTATTTCACGAAAGCGTGGCTGATGGAGCAGAAATCGCTTATCGCTCTGCT
GGTGCTGATCGCGATTGTCTCGACGTTAAGCCCGAACTTTTTCACCATCAATAACTTATTCAATATTCTCCAGCAAACTT
CGGTGAACGCCATTATGGCGGTCGGGATGACGCTGGTGATCCTGACGTCGGGCATAGACTTGTCGGTAGGTTCTCTGTTG
GCGCTAACCGGCGCAGTTGCTGCATCTATCGTCGGCATTGAAGTCAATGCGCTGGTGGCTGTCGCTGCTGCTCTCACGTT
AGGTGCCGCAATTGGTGCGGTAACCGGGGTGATTGTAGCGAAAGGTCGCGTCCAGGCGTTTATCGCTACGCTGGTTATGA
TGCTTTTACTGCGCGGCGTGACCATGGTTTATACCAACGGTAGCCCAGTGAATACCGGCTTTACTGAGAACGCCGATCTG
TTTGGCTGGTTTGGTATTGGTCGTCCGCTGGGCGTACCGACGCCAGTCTGGATCATGGGGATTGTCTTCCTCGCGGCCTG
GTACATGCTGCATCACACGCGTCTGGGGCGTTACATCTACGCGCTGGGCGGCAACGAAGCGGCAACGCGTCTTTCTGGTA
TCAACGTCAATAAAATCAAAATCATCGTCTATTCTCTTTGTGGTCTGCTGGCATCGCTGGCCGGGATCATTGAAGTGGCG
CGTCTCTCCTCTGCACAACCCACGGCGGGGACTGGCTATGAGCTGGATGCTATTGCTGCGGTGGTTCTGGGCGGTACGAG
TCTGGCGGGCGGAAAAGGTCGCATTGTTGGGACGTTGATCGGCGCATTAATTCTTGGCTTCCTTAATAATGGATTGAATT
TGTTAGGTGTTTCCTCCTATTACCAGATGATCGTCAAAGCGGTGGTGATTTTGCTGGCGGTGCTGGTAGACAACAAAAAG
CAGTAA

Upstream 100 bases:

>100_bases
GGGCATCTCAGCGGGGAATTTACTCGTGAGCAGGCCACCCAGGAAGTGTTAATGGCTGTCGCTGTGGGCAAGCTTAATCG
CGTGAATCAGGAGTAAAAAA

Downstream 100 bases:

>100_bases
TAACGACTACAGGACATCTTGAATATGAACATGAAAAAACTGGCTACCCTGGTTTCCGCTGTTGCGCTAAGCGCCACCGT
CAGTGCGAATGCGATGGCAA

Product: ribose ABC transporter permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGIEVNALVAVAAALTLGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q

Sequences:

>Translated_321_residues
MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGIEVNALVAVAAALTLGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q
>Mature_321_residues
MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLL
ALTGAVAASIVGIEVNALVAVAAALTLGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL
FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKK
Q

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=321, Percent_Identity=99.3769470404984, Blast_Score=618, Evalue=1e-178,
Organism=Escherichia coli, GI1788896, Length=315, Percent_Identity=39.3650793650794, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=39.375, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI145693152, Length=310, Percent_Identity=35.8064516129032, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1789992, Length=359, Percent_Identity=35.3760445682451, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI87082395, Length=304, Percent_Identity=36.5131578947368, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI145693214, Length=328, Percent_Identity=36.5853658536585, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788471, Length=323, Percent_Identity=36.2229102167183, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=33.9041095890411, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787794, Length=292, Percent_Identity=29.7945205479452, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33494; Mature: 33494

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALTLGAAIGAVTGVIVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMG
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHH
VGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALTLGAAIGAVTGVIVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMG
CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHH
IVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVA
HHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSY
HHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHH
YQMIVKAVVILLAVLVDNKKQ
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]