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The map label for this gene is yihW

Identifier: 30064827

GI number: 30064827

Start: 3685120

End: 3685905

Strand: Reverse

Name: yihW

Synonym: S3790

Alternate gene names: 30064827

Gene position: 3685905-3685120 (Counterclockwise)

Preceding gene: 30064828

Following gene: 30064826

Centisome position: 80.14

GC content: 52.29

Gene sequence:

>786_bases
ATGAGCCTTACCGAACTAACCGGTAACCCGCGGCACGACCAACTCCTCATGCTGATCGCCGAGCGTGGGTATATGAATAT
TGATGAGCTGGCAAATCTGCTGGATGTCTCCACGCAGACGGTCCGCCGGGATATTCGTAAATTAAGCGAGCAAGGCCTGA
TTACGCGCCATCACGGTGGCGCGGGTCGGGCTTCCAGCGTCGTTAATACGGCGTTCGAGCAGCGTGAGGTTTCGCAAACC
GAGAAAAAAAAAGCGATTGCCGAAGCGGTGGCAGACTATATTCCTGATGGTTCAACAATATTTATCACCATTGGTACGAC
TGTTGAGCATGTTGCCCGGGCGTTACTTAACCATAATCATTTGCGGATAATCACCAACAGCCTGCGTGTGGCGCATATTC
TTTACCACAACCCGCGCTTTGAAGTGATGGTGCCCGGCGGTACGTTGCGCTCTCATAATAGCGGGATCATTGGCCCTTCA
GCGGCGTCCTTTGTGGCTGATTTTCGTGCTGATTATCTGGTAACAAGCGTTGGGGCGATTGAGAGCGATGGCGCGTTGAT
GGAGTTTGATGTAAACGAAGCTAACGTGGTGAAAACGATGATGGCGCACGCGAGAAATATTCTGCTGGTCGCCGATCACA
CTAAGTATCATGCTTCGGCGGCGGTTGAAATTGGTAACGTGGCACAGGTCACTGCGCTCTTTACCGACGAGCTGCCGCCC
GCTGCGCTAAAATCACGCTTACAAGACAGCCAAATTGAAATCATTCTTCCCCAGGAAGACGCGTAG

Upstream 100 bases:

>100_bases
TCCCGGTGGACGAGCCGGGATCCCTGACTGTGATCAAACCCGATCTTTTTTGTCACTTTTTGTATAAAATGCCAGGGTGA
TGGTTTTTCGAGGAATTTTC

Downstream 100 bases:

>100_bases
ATTTTTGTGACCGTTAACCTGGCTTCATACCTTGCCACATAGCCAAACCCATCCTTTCCCGCTACAGTTAATTTCTTGTG
GCGCGAAAGGAGGCAAAAAT

Product: putative DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQT
EKKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPS
AASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP
AALKSRLQDSQIEIILPQEDA

Sequences:

>Translated_261_residues
MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQT
EKKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPS
AASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP
AALKSRLQDSQIEIILPQEDA
>Mature_260_residues
SLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQTE
KKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSA
ASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPPA
ALKSRLQDSQIEIILPQEDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082344, Length=261, Percent_Identity=99.6168582375479, Blast_Score=530, Evalue=1e-152,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=44.3089430894309, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=27.1653543307087, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788069, Length=246, Percent_Identity=25.609756097561, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789059, Length=254, Percent_Identity=27.5590551181102, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=28.695652173913, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI226510968, Length=234, Percent_Identity=26.9230769230769, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787540, Length=247, Percent_Identity=25.1012145748988, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790753, Length=251, Percent_Identity=22.7091633466135, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790635, Length=234, Percent_Identity=23.5042735042735, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28507; Mature: 28376

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGG
CCCCCCCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
AGRASSVVNTAFEQREVSQTEKKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC
LRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAI
EEEEECCCEEEEEEEECCCEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP
CCCCCEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHEEEECCHHHHHHHHHCCCCH
AALKSRLQDSQIEIILPQEDA
HHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure 
SLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRDIRKLSEQGLITRHHGG
CCCCCCCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
AGRASSVVNTAFEQREVSQTEKKKAIAEAVADYIPDGSTIFITIGTTVEHVARALLNHNH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCC
LRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAI
EEEEECCCEEEEEEEECCCEEEEECCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
ESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPP
CCCCCEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHEEEECCHHHHHHHHHCCCCH
AALKSRLQDSQIEIILPQEDA
HHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8346018; 9278503 [H]