Click here to switch to the map view.

The map label for this gene is yraP

Identifier: 30064490

GI number: 30064490

Start: 3279732

End: 3280307

Strand: Direct

Name: yraP

Synonym: S3408

Alternate gene names: 30064490

Gene position: 3279732-3280307 (Clockwise)

Preceding gene: 30064489

Following gene: 30064493

Centisome position: 71.31

GC content: 53.99

Gene sequence:

>576_bases
ATGAAGGCATTATCGCCAATCGCAGTCCTTATTTCCGCGCTGCTGTTGCAAGGTTGTGTTGCCGCTGCCGTAGTGGGTAC
CGCTGCTGTGGGTACCAAAGCCGCAACTGACCCACGCAGTGTCGGCACCCAGGTGGACGATGGTACCCTGGAAGTGCGCG
TGAACAGCGCATTGTCGAAAGACGAACAGATTAAGAAAGAAACCCGTATTAATGTCACGGCCTATCAGGGCAAAGTGCTG
CTGGTTGGGCAGTCACCAAATGCTGAACTTTCGGCTCGCGCCAAACAGATTGCTATGGGCGTAGACGGTGCCAACGAAGT
GTATAACGAGATTCGTCAGGGCCAGCCGATTGGTCTGGGCGAAGCATCTAACGATACGTGGATCACCACCAAAGTGCGTT
CGCAGCTCTTAACCAGCGACCTGGTGAAATCGTCCAACGTGAAAGTGACCACCGAAAACGGTGAAGTGTTCCTGATGGGG
CTGGTGACTGAACGTGAAGCGAAAGCGGCGGCAGATATTGCCAGCCGGGTGAGCGGCGTAAAGCGGGTTACCACAGCGTT
TACGTTTATTAAATAG

Upstream 100 bases:

>100_bases
TAGTGCTCGCATTCAGGAAATGCATATGCTGACGGTAAATTGCCTGTGCGATCTGATCGATAACACGCTTTTCCCTCACC
AGGATGATTAAGGAGAATAC

Downstream 100 bases:

>100_bases
CAGCCCCTTGTAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATGCAAACCGTAGGTCGGATAAGGC
GTTTACGCCGCATCCGACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVL
LVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
LVTEREAKAAADIASRVSGVKRVTTAFTFIK

Sequences:

>Translated_191_residues
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVL
LVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
LVTEREAKAAADIASRVSGVKRVTTAFTFIK
>Mature_191_residues
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVL
LVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
LVTEREAKAAADIASRVSGVKRVTTAFTFIK

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 BON domains [H]

Homologues:

Organism=Escherichia coli, GI1789540, Length=191, Percent_Identity=99.4764397905759, Blast_Score=379, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON [H]

EC number: NA

Molecular weight: Translated: 20058; Mature: 20058

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEECCCCCC
DEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLG
HHHHHHHHEEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
EASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGV
CCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHH
KRVTTAFTFIK
HHHHHHHHCCC
>Mature Secondary Structure
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCEEEEEECCCCCC
DEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLG
HHHHHHHHEEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
EASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGV
CCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHH
KRVTTAFTFIK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]