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The map label for this gene is yqjA

Identifier: 30064442

GI number: 30064442

Start: 3230868

End: 3231530

Strand: Direct

Name: yqjA

Synonym: S3346

Alternate gene names: 30064442

Gene position: 3230868-3231530 (Clockwise)

Preceding gene: 30064441

Following gene: 30064443

Centisome position: 70.25

GC content: 50.38

Gene sequence:

>663_bases
ATGGAACTTTTGACCCAATTGCTGCAAGCCCTGTGGGCGCAGGATTTTGAAACCCTGGCCAATCCATCGATGATTGGCAT
GTTGTATTTTGTCTTGTTTGTAATTTTGTTCCTTGAAAATGGCTTGCTTCCGGCGGCCTTTTTACCGGGCGACAGTTTAC
TGGTATTGGTCGGCGTGTTGATTGCGAAAGGCGCGATGGGTTACCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGC
CTCGGTTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACC
CGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACGGTTTATCGGCGCTGTTAATTGGTCGCTTTATTGCAT
TTGTCAGAACACTGCTGCCGACGATTGCCGGGTTATCAGGGCTGAATAACGCGCGCTTTCAGTTCTTCAACTGGATGAGC
GGTCTGCTGTGGGTATTGATCCTGACAACTCTGGGTTACATGCTCGGCAAAACGCCGGTATTTTTAAAGTACGAGGACCA
GCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAA
AGAAATATGGAAATCGGGGGTAA

Upstream 100 bases:

>100_bases
GATGTATCAAACCCGCAGAACATACCAAAACAGCAATAACATTGCGGTAGTGCATCTTTTAAAACCAGCGTGGCGTTAAC
CGATTCACCAGGAATAATGA

Downstream 100 bases:

>100_bases
GGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCACTGTTTTACTTCTGGTCGGCACGCTGTTGCT
GGCCTGGTCCGCGGTTCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG

Sequences:

>Translated_220_residues
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
>Mature_220_residues
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAAS
LGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family

Homologues:

Organism=Escherichia coli, GI1789481, Length=220, Percent_Identity=100, Blast_Score=438, Evalue=1e-124,
Organism=Escherichia coli, GI1789384, Length=218, Percent_Identity=61.9266055045872, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI1788656, Length=154, Percent_Identity=34.4155844155844, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQJA_ECO57 (P0AA65)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A91126
- PIR:   H85970
- RefSeq:   NP_289669.1
- RefSeq:   NP_312004.1
- ProteinModelPortal:   P0AA65
- EnsemblBacteria:   EBESCT00000027998
- EnsemblBacteria:   EBESCT00000057963
- GeneID:   916188
- GeneID:   958564
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4449
- KEGG:   ecs:ECs3977
- GeneTree:   EBGT00050000009773
- HOGENOM:   HBG657460
- OMA:   GKWLGNT
- ProtClustDB:   CLSK880580
- BioCyc:   ECOL83334:ECS3977-MONOMER
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 24586; Mature: 24586

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12afdc78)-; HASH(0x149c50b4)-; HASH(0x14df2090)-; HASH(0x143d7c28)-; HASH(0x1461461c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796