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The map label for this gene is speC

Identifier: 30064286

GI number: 30064286

Start: 3041294

End: 3043489

Strand: Reverse

Name: speC

Synonym: S3165

Alternate gene names: 30064286

Gene position: 3043489-3041294 (Counterclockwise)

Preceding gene: 30064293

Following gene: 30064281

Centisome position: 66.17

GC content: 52.0

Gene sequence:

>2196_bases
ATGGGGCAGGGTTTTCCACCTTGTCCGGTATTCTTACTTCCCCGAAACGGGTTTGCGCTTATGAAATCAATGAATATTGC
CGCCAGTAGTGAACTGGTATCCCGACTTTCTTCTCATCGCCGCGTGGTGGCGTTGGGAGATACTGATTTTACGGACGTCG
CGGCAGTCGTCATTACCGCTGCGGATAGTCGCAGTGGCATTCTTGCGTTGCTTAAGCGCACCGGTTTTCATCTACCGGTG
TTTTTGTATTCCGAACATGCTGTTGAATTACCTGCGGGCGTTACGGCGGTAATCAACGGCAACGAGCAGCAGTGGCTGGA
GCTGGAATCCGCAGCCTGTCAGTATGAAGAGAATTTGCTGCCACCGTTTTATGACACGCTGACGCAGTACGTTGAGATGG
GCAACAGCACCTTTGCTTGCCCTGGACATCAACATGGTGCGTTCTTTAAAAAGCATCCTGCCGGACGCCATTTTTACGAT
TTCTTTGGTGAGAACGTCTTTCGCGCCGATATGTGTAACGCTGACGTAAAATTGGGCGATCTGCTTATTCATGAAGGATC
GGCGAAAGATGCGCAGAAATTCGCAGCCAAAGTCTTTCATGCCGATAAAACCTATTTTGTGCTGAACGGCACATCGGCAG
CGAATAAAGTGGTGACGAATGCGCTGTTAACGCGTGGCGATCTGGTGCTCTTCGACCGTAACAACCATAAGTCGAATCAT
CACGGCGCGCTGATTCAGGCGGGGACGACGCCGGTCTATCTGGAAGCTTCACGTAACCCGTTTGGTTTCATTGGCGGTAT
TGATGCGCACTGTTTTAATGAAGAGTATCTGCGCCAGCAAATTCGCGACGTTGCGCCAGAAAAAGCCGACCTGCCGCGCC
CGTTTCGCCTGACGATTATTCAGCTGGGAACCTATGACGGCACTGTCTATAACGCCCGTCAGGTGATCGATACCATTGGG
CATCTGTGTGATTACATTCTGTTTGATTCCGCGTGGGTCGGTTACGAACAGTTTATCTCGATGATGGCGGATAGCTCGCC
GCTGCTGTTAGAACTTAACGAAAACGATCCGGGGATTTTTGTGACCCAGTTGGTGCACAAACAGCAGGCTGGATTCTCAC
AGACGTCGCAGATCCATAAAAAAGATAACCATATCCGCGGACAGGCGCGTTTTTGCCCGCATAAGCGGTTGAATAACGCC
TTTATGCTCCATGCTTCTACCAGCCCTTTCTATCCGCTGTTTGCTGCACTGGATGTTAACGCCAAAATTCATGAAGGGGA
GAGTGGGCGTCGGCTGTGGGCTGAGTGCGTTGAGTTGGGTATTGAGTCGCGCAAGGCTATTCTTGCGCGCTGTAAGCTGT
TCCGCCCGTTTATCCCGCCCGTTGTTGATGGCAAATTGTGGCAGGATTATCCGACATCAGTGTTAGCCAGCGACCGCCGT
TTTTTCAGTTTTGAGCCGGGGGCGAAGTGGCACGGCTTTGAAGGATATGCCGCGGATCAGTATTTTGTTGATCCGTGCAA
GCTGTTACTCACTACACCAGGTATCAATGCCGAAACCGGCGAATATAGCGACTTTGGCGTTCCGGCGACGATTCTGGCGC
ACTATCTGCGTGAGAACGGCATTGTGCCGGAGAAGTGCGATCTCAACTCCATTCTGTTCTTATTAACTCCGGCGGAAAGC
CACGAGAAGCTGGCACAACTGGTGGCGATGCTGGCGCAATTTGAACAGCATATTGAGGATGACTCGTCGCTGGCTGAGGT
GTTGCCGAGCGTTTATAACAAATATCCGGTGCGCTATCGCGACTACACCCTGCGCCAGTTGTGTCAGGAGATGCACGATC
TGTATGTCAGTTTCGACGTCAAAGACCTACAAAAAGCGATGTTCCGCCAGCAGAGTTTCCCGTCAGTGGTGATGAACCCC
CAGGATGCGCATAGCGCTTATATTCGCGGTGAAGTGGAGTTGGTGCGGATTCGTGATGCCGAAGGGCGAATTGCGGCAGA
AGGGGCGTTGCCTTATCCACCTGGCGTGCTTTGCGTGGTACCCGGGGAAGTCTGGGGTGGGGCGGTTCAACGTTATTTCC
TTGCGCTGGAAGAAGGCGTGAATTTGTTGCCGGGATTTTCGCCGGAGTTGCAAGGTGTCTATAGCGAAACCGATGCGGAT
GGCATGAAACGATTGTACGGTTATGTGTTGAAGTAA

Upstream 100 bases:

>100_bases
GTTAACGCACGCTCACTGCAGGACAACAGTAAAATCAGAGCGTTTCTGCTTTTACTGATGTCTGGCGGTCGGAGCTGGTG
ACCAGTTTGACCCATATCTC

Downstream 100 bases:

>100_bases
GAATAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTTCTTTGCGTAATTAGTGGCTAACCGTCTGTGTGCCTGTCGGGA
CACGAACGTGTTTATATTTG

Product: ornithine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 730

Protein sequence:

>731_residues
MGQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPV
FLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYD
FFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNH
HGALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLTIIQLGTYDGTVYNARQVIDTIG
HLCDYILFDSAWVGYEQFISMMADSSPLLLELNENDPGIFVTQLVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNA
FMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRR
FFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGINAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAES
HEKLAQLVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNP
QDAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDAD
GMKRLYGYVLK

Sequences:

>Translated_731_residues
MGQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPV
FLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYD
FFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNH
HGALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLTIIQLGTYDGTVYNARQVIDTIG
HLCDYILFDSAWVGYEQFISMMADSSPLLLELNENDPGIFVTQLVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNA
FMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRR
FFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGINAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAES
HEKLAQLVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNP
QDAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDAD
GMKRLYGYVLK
>Mature_730_residues
GQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPVF
LYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDF
FGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHH
GALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLTIIQLGTYDGTVYNARQVIDTIGH
LCDYILFDSAWVGYEQFISMMADSSPLLLELNENDPGIFVTQLVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAF
MLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRRF
FSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGINAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAESH
EKLAQLVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQ
DAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADG
MKRLYGYVLK

Specific function: Spermidine biosynthesis from ornithine. [C]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI87082193, Length=711, Percent_Identity=98.1715893108298, Blast_Score=1456, Evalue=0.0,
Organism=Escherichia coli, GI1786909, Length=719, Percent_Identity=66.4812239221141, Blast_Score=1001, Evalue=0.0,
Organism=Escherichia coli, GI221142684, Length=636, Percent_Identity=33.0188679245283, Blast_Score=350, Evalue=2e-97,
Organism=Escherichia coli, GI1790573, Length=619, Percent_Identity=33.6025848142165, Blast_Score=324, Evalue=2e-89,
Organism=Escherichia coli, GI1786384, Length=621, Percent_Identity=33.4943639291465, Blast_Score=320, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR005308
- InterPro:   IPR011193
- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]

EC number: =4.1.1.17 [H]

Molecular weight: Translated: 81658; Mature: 81526

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITA
CCCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCHHHHEEEEEEE
ADSRSGILALLKRTGFHLPVFLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLL
CCCCCHHHHHHHHCCCCEEEEEECCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
PPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGD
CHHHHHHHHHHHCCCCEEECCCCCCCCCHHCCCCCCHHHHHHCCCEEEHHCCCCCCEECE
LLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNH
EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
HGALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLTII
CCEEEEECCCEEEEEECCCCCEEECCCCHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEE
QLGTYDGTVYNARQVIDTIGHLCDYILFDSAWVGYEQFISMMADSSPLLLELNENDPGIF
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEE
VTQLVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVN
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCEEEEEEECC
AKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRR
CEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCE
FFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGINAETGEYSDFGVPATILAHYLRENG
EEEECCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
IVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYR
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEC
DYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAHSAYIRGEVELVRIRDA
CHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCEEECCCHHCCEEEECCEEEEEEECC
EGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDAD
CCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCCCHH
GMKRLYGYVLK
HHHHHHHHHCC
>Mature Secondary Structure 
GQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITA
CCCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHCCEEEEECCCCHHHHEEEEEEE
ADSRSGILALLKRTGFHLPVFLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLL
CCCCCHHHHHHHHCCCCEEEEEECCCCEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
PPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGD
CHHHHHHHHHHHCCCCEEECCCCCCCCCHHCCCCCCHHHHHHCCCEEEHHCCCCCCEECE
LLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNH
EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
HGALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPFRLTII
CCEEEEECCCEEEEEECCCCCEEECCCCHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEEE
QLGTYDGTVYNARQVIDTIGHLCDYILFDSAWVGYEQFISMMADSSPLLLELNENDPGIF
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEE
VTQLVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVN
HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCEEEEEECCCCCCEEEEEEECC
AKIHEGESGRRLWAECVELGIESRKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRR
CEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCE
FFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGINAETGEYSDFGVPATILAHYLRENG
EEEECCCCCCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCC
IVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYR
CCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEC
DYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAHSAYIRGEVELVRIRDA
CHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCEEECCCHHCCEEEECCEEEEEEECC
EGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDAD
CCCEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCCCHH
GMKRLYGYVLK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]