Definition | Shigella flexneri 2a str. 2457T, complete genome. |
---|---|
Accession | NC_004741 |
Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is yqgC
Identifier: 30064256
GI number: 30064256
Start: 3016666
End: 3016881
Strand: Direct
Name: yqgC
Synonym: S3135
Alternate gene names: 30064256
Gene position: 3016666-3016881 (Clockwise)
Preceding gene: 30064249
Following gene: 30064258
Centisome position: 65.59
GC content: 48.61
Gene sequence:
>216_bases ATGGGTATAACATCGGCAGGTATGCAAAGCAGAGATGCAGAGTGCGGGGAACGAGTCTTCACCAGAACGGTGAGACAGGT TAAGCAGCAGACAACGGTTCATTATTTCGTATCACCTCCACGGCCGCCTGTTAAGACGAACCCACAAGCCAAAACTCTGA TTTCAACCCGGCTGGAAGTGGCAACACGAAAGAAACGTCGTGTGCTTTTTATTTAA
Upstream 100 bases:
>100_bases CAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTT GAATCCTGAGAAGCGCCGAG
Downstream 100 bases:
>100_bases GCCGCGCGCCGCGTTTTATACCCCACAATGGCAGAAAATTGCAAAAGATAAATACGCAGAATGCCGGCATTGTCAGGAAA AATTTCCAGCCACGTTTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 71; Mature: 70
Protein sequence:
>71_residues MGITSAGMQSRDAECGERVFTRTVRQVKQQTTVHYFVSPPRPPVKTNPQAKTLISTRLEVATRKKRRVLFI
Sequences:
>Translated_71_residues MGITSAGMQSRDAECGERVFTRTVRQVKQQTTVHYFVSPPRPPVKTNPQAKTLISTRLEVATRKKRRVLFI >Mature_70_residues GITSAGMQSRDAECGERVFTRTVRQVKQQTTVHYFVSPPRPPVKTNPQAKTLISTRLEVATRKKRRVLFI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789309, Length=71, Percent_Identity=98.5915492957747, Blast_Score=144, Evalue=9e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020102 - ProDom: PD056256 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8101; Mature: 7969
Theoretical pI: Translated: 12.03; Mature: 12.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGITSAGMQSRDAECGERVFTRTVRQVKQQTTVHYFVSPPRPPVKTNPQAKTLISTRLEV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHH ATRKKRRVLFI HHHCCCCEECC >Mature Secondary Structure GITSAGMQSRDAECGERVFTRTVRQVKQQTTVHYFVSPPRPPVKTNPQAKTLISTRLEV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHH ATRKKRRVLFI HHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]