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The map label for this gene is ygfI

Identifier: 30064229

GI number: 30064229

Start: 2992572

End: 2993522

Strand: Reverse

Name: ygfI

Synonym: S3106

Alternate gene names: 30064229

Gene position: 2993522-2992572 (Counterclockwise)

Preceding gene: 30064230

Following gene: 30064224

Centisome position: 65.09

GC content: 44.58

Gene sequence:

>951_bases
ATGGACATTTTTATTTCGAAAAAGATGCGCAATTTCATTTTATTAGCGCAAACCAATAATATTGCCCGGGCGGCAGAAAA
AATCCATATGACGGCTTCGCCATTTGGTAAAAGCATTGCCGCGCTGGAAGAACAAATTGGCTATACGCTATTTACCCGCA
AAGATAATAATATCAGCCTCAATAAAGCCGGTCAGGAACTGTATCAAAAACTGTTCCCGGTTTATCAACGACTTTCTGCG
ATTGATAATGAAATCCATAACTCAGGGCGTCGTTCACGAGAAATTGTGATTGGCATAGATAATACTTATCCGACAATTAT
TTTCGATCAGTTGATTAGTCTCGGAGATAAGTATGAAGGCGTGACCGCCCAGCCAGTTGAGTTCAGCGAAAACGGCGTTA
TCGATAATCTTTTTGACCGTCAGTTAGATTTTATTATCTCCCCACAGCATGTATCTGCACGAGTTCAGGAACTGGAAAAC
CTGACTATCAGTGAATTACCACCGCTGCGATTGGGCTTTCTCGTTTCTCGCCGTTATGAAGAGCGTCAAGAGCAAGAGCT
GCTTCAGGAGCTGCCCTGGCTACAAATGCGCTTTCAAAACCGGGCTAACTTCGAAGCAATGATTGATGCGAATATGCGAC
CTTGTGGGATCAATCCCACCATTATTTATCGTCCCTACAGTTTTATGGCCAAAATCAGCGCCGTGGAGCGCGGACATTTT
CTGACGGTGATCCCGCATTTTGCCTGGCGACTGGTGAATCCGGCAACGCTGAAATATTTTGATGCGCCGCACAGGCCGAT
GTATATGCAGGAATATCTTTATTCAATCAGAAATCATCGTTATACCGCCACGATCTTCAGCATATTGCTGAAGATCGTGA
CGGGACAAACCATTAACCCAGCATCGAGCCGGTTGCAATTAAATTACGGTGTAAGTCGAAGACGTGGCTAA

Upstream 100 bases:

>100_bases
TTTCTGTAAAACCATGACGTAATCACCTATCTTTGCTCGCGGTTTCATCAAGGATAGGCTGACTGAAACGGTTAAGCGGA
CAAGGATGCGGGGAGGGGGG

Downstream 100 bases:

>100_bases
GATCGTGGTGAATATGTCCGCCGGGCGCATTTTCCAGATAGCGATGCAGATAATCCCGATACATAGGATGTGCACAATTA
TCAATGATAGTGCGGGCGCG

Product: putative LYSR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATIFSILLKIVTGQTINPASSRLQLNYGVSRRRG

Sequences:

>Translated_316_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATIFSILLKIVTGQTINPASSRLQLNYGVSRRRG
>Mature_316_residues
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATIFSILLKIVTGQTINPASSRLQLNYGVSRRRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082184, Length=286, Percent_Identity=99.3006993006993, Blast_Score=591, Evalue=1e-170,
Organism=Escherichia coli, GI157672245, Length=254, Percent_Identity=24.4094488188976, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36624; Mature: 36624

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISL
CCEEEECCCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCEEH
NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFLVSRRYE
CCCCCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
ERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
HHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCE
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATIFSILLKIVTGQTINP
EEEHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
ASSRLQLNYGVSRRRG
CCCEEEEECCCCCCCC
>Mature Secondary Structure
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTLFTRKDNNISL
CCEEEECCCCCEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCEEH
NKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNTYPTIIFDQLISLGDKYEG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
VTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELENLTISELPPLRLGFLVSRRYE
CCCCCCCCCCCCCHHHHHHHHHHHEECCHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHH
ERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGINPTIIYRPYSFMAKISAVERGHF
HHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCE
LTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSIRNHRYTATIFSILLKIVTGQTINP
EEEHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
ASSRLQLNYGVSRRRG
CCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]