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The map label for this gene is visC

Identifier: 30064217

GI number: 30064217

Start: 2977118

End: 2978320

Strand: Reverse

Name: visC

Synonym: S3091

Alternate gene names: 30064217

Gene position: 2978320-2977118 (Counterclockwise)

Preceding gene: 30064218

Following gene: 30064216

Centisome position: 64.76

GC content: 55.11

Gene sequence:

>1203_bases
ATGCAAAGTGTTGATGTAGCCATTGTTGGCGGCGGCATGGTGGGGCTGGCGGTTGCCTGCGGCTTACAGGGGAGCGGCTT
ACGCGTTGCCGTACTGGAGCAGCGCGTACCGGAACCTCTGGCGGTAGATGCACTACCACAACTGCGCGTTTCGGCTATCA
ATGCCGCCAGCGAAAAATTACTCACCCGTCTTGGCGTCTGGCAGGACATTCTCGCTCGTAGGGCCAGTTGTTATCACGGC
ATGGAAGTGTGGGACAAAGACAGTTTTGGTCACATCTCGTTTGACGATCAAAGCATGGGCTATAGCCATCTTGGGCACAT
CGTTGAAAACTCAGTGATTCACTACGCGCTGTGGAACAAAGCGCAGCAGTCGTCAGATATTACTCTGTTGGCCCCCACAG
AATTACAGCAGGTCGCCTGGGGAGAAAATGAAACCTTCCTGACGCTGAAAGATGGCAGCATGTTAACGGCGCGTCTGGTG
ATTGGCGCGGACGGTGCTAATTCCTGGTTGCGCAACAAAGCAGATATTCCGCTGACTTTCTGGGATTATCAGCATCACGC
GCTGGTAGCGACCATTCGCACGGAAGAACCGCATGATGCGGTGGCGCGGCAGGTTTTCCATGGCGAAGGCATTCTGGCCT
TTTTACCGCTTAGCGATCCGCATCTTTGCTCGATTGTCTGGTCACTGTCGCCAGAGGAAGCGCAGCGGATGCAGCAGGCA
AGTGAAGACGAATTTAATCGCGCGTTAAATATCGCTTTTGATAATCGCCTTGGCTTATGCAAGGTTGAGAGCGCGCGTCA
GGTGTTCCCGCTGACGGGGCGTTATGCGTGCCAGTTTGCCGCACACCGTCTGGCGCTGGTGGGCGACGCCGCGCATACCA
TTCACCCACTGGCGGGGCAGGGCGTTAATCTCGGATTTATGGACGCCGCAGAGCTGATTGCTGAACTGAAACGGTTGCAT
CGTCAGGGTAAAGACATCGGGCAGTACATTTACCTGCGCCGCTATGAACGTAGCCGCAAGCACAGCGCGGCGCTGATGCT
GGCTGGTATGCAGGGTTTTCGCGATCTCTTTTCCGGCGCTAATCCGGCGAAAAAACTGCTGCGTGATATTGGTTTGAAAC
TGGCCGACACGCTTCCTGGCGTTAAGCCGCAACTTATCCGCCAGGCAATGGGATTAAACGATTTGCCTGAATGGCTGCGT
TAA

Upstream 100 bases:

>100_bases
GGACTGATGACGATGGAATTATTCACCCCGGCACGCGATGTGCTGGCGCAGCGCACCCTCGGTTGGGTGGCGCGTTGAAG
GCGGTTTTAAGGAATAAACA

Downstream 100 bases:

>100_bases
AAATTTCTCCTCTGTTGTTTATTTGATACCCATCACACTTTCATCTCCCGGTTTTTTCGCCGGGAGATTTTCCTCATTTG
AAATAAACTAATTTCACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDALPQLRVSAINAASEKLLTRLGVWQDILARRASCYHG
MEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLV
IGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYACQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLH
RQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGANPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR

Sequences:

>Translated_400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDALPQLRVSAINAASEKLLTRLGVWQDILARRASCYHG
MEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLV
IGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYACQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLH
RQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGANPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR
>Mature_400_residues
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDALPQLRVSAINAASEKLLTRLGVWQDILARRASCYHG
MEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNKAQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLV
IGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYACQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLH
RQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGANPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=381, Percent_Identity=34.3832020997375, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI32967307, Length=347, Percent_Identity=34.2939481268012, Blast_Score=158, Evalue=8e-39,
Organism=Escherichia coli, GI1789273, Length=400, Percent_Identity=97.5, Blast_Score=800, Evalue=0.0,
Organism=Escherichia coli, GI1786883, Length=392, Percent_Identity=39.2857142857143, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1789274, Length=391, Percent_Identity=30.690537084399, Blast_Score=169, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI25146631, Length=431, Percent_Identity=31.554524361949, Blast_Score=172, Evalue=4e-43,
Organism=Saccharomyces cerevisiae, GI6321694, Length=458, Percent_Identity=24.8908296943231, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI19920760, Length=382, Percent_Identity=33.5078534031414, Blast_Score=177, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 44165; Mature: 44165

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDALPQLRVSAINAASEKL
CCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LTRLGVWQDILARRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNK
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEHHCC
AQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTF
CCCCCCEEEECCHHHHHHHCCCCCEEEEEECCCEEEEEEEEECCCCCHHHCCCCCCCEEE
WDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
ECCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHC
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYACQFAAHRLALVGDAAHTIHPLAGQ
CHHHHHHEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCC
GVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGA
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR
CHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCHHHHC
>Mature Secondary Structure
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDALPQLRVSAINAASEKL
CCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHH
LTRLGVWQDILARRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWNK
HHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEHHCC
AQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLVIGADGANSWLRNKADIPLTF
CCCCCCEEEECCHHHHHHHCCCCCEEEEEECCCEEEEEEEEECCCCCHHHCCCCCCCEEE
WDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLSDPHLCSIVWSLSPEEAQRMQQA
ECCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHC
SEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYACQFAAHRLALVGDAAHTIHPLAGQ
CHHHHHHEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCCCCC
GVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGA
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR
CHHHHHHHHHCCHHHHHCCCCCHHHHHHHCCCCCCHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]