Click here to switch to the map view.

The map label for this gene is ygeD

Identifier: 30064176

GI number: 30064176

Start: 2927713

End: 2928903

Strand: Reverse

Name: ygeD

Synonym: S3043

Alternate gene names: 30064176

Gene position: 2928903-2927713 (Counterclockwise)

Preceding gene: 30064177

Following gene: 30064171

Centisome position: 63.68

GC content: 55.84

Gene sequence:

>1191_bases
ATGAGTGAGTCAGTGCACACTAACACTTCGTTGTGGTCGAAGGGGATGAAAGCGGTTATCGTGGCGCAGTTTCTCTCTGC
GTTTGGCGATAACGCGCTACTGTTTGCCACTCTGGCGTTACTGAAAGCGCAGTTCTATCCGGAGTGGAGCCAGCCCATCC
TGCAAATGGTGTTTGTAGGTGCTTACATTCTTTTGGCGCCGTTTGTCGGGCAGGTGGCGGATAGCTTCGCCAAAGGCCGG
GTGATGATGTTTGCCAACGGCCTGAAGCTGCTGGGCGCAGCCAGTATCTGCTTTGGTATCAATCCGTTTCTCGGCTATAC
GCTGGTGGGTGTTGGTGCTGCAGCCTGTTCACCGGCGAAATACGGTATTCTCGGCGAATTAACCACGGGTAGTAAGTTAG
TAAAAGCTAACGGTTTAATGGAAGCTTCTGCCATAGCGGCGATTTTACTCGGTTCCGTAGCCGGTGGTGTGCTGGCTGAC
TGGCATGTCCTGGTCGCTCTGGCCGCATGCGCACTGGCCTACGGTGGTGCGGTCGTTGCCAATATCTACATTCCCAAACT
GGCGGCGCGTCCGGGGCAGTCCTGGAATCTCATCAACATGACCCGCAGTTTCCTGAATGCCTGCACCTCGCTATGGTGCA
ATGGTGAAACGCGTTTTTCGCTGGTGGGCACCAGTTTATTCTGGGGAGCGGGTGTCACGCTGCGTTTCCTGTTGGTGCTG
TGGGTACCGGTGGCGCTGGGCATTACCGATAACGCTACGCCGACCTATCTCAACGCGATGGTAGCGATTGGTATCGTGGT
TGGCGCAGGTGCGGCAGCGAAGCTGGTTACGCTGGAAACCGTGTCACGCTGTATGCCAGCCGGGATTTTGATTGGCGTGG
TGGTACCGATTTTCTCCCTGCAACACGAGCTGCTGCCAGCCTATGCCTTGTTGATGCTGATTGGCGTGCTGGGGGGCTTT
TTTGTCGTTCCGCTCAATGCGTTGCTACAGGAGCGGGGTAAAAAAAGCGTCGGGGCGGGGAATGCGATTGCAGTACAAAA
CCTTGGCGAAAACAGCGCCATGTTGTTGATGCTGGGCATTTACTCGCTGGCGGTAATGGTAGGCATCCCGGTCGTGCCCA
TTGGCATTGGCTTCGGTGCGCTATTTGCGCTGGCAATAACGGCGCTGTGGATCTGGCAGCGCCGTCATTAA

Upstream 100 bases:

>100_bases
CCGCGCGATATTCGCTATCTGAAACAGATGCCATTACTTGGCAGCGGCAAACCTGACTTTGTCACGTTGAAAAGCTGGGT
AGACGAAGCGGAACAACACG

Downstream 100 bases:

>100_bases
TATTTAACGCCGGTTTTAACCGGCGTTAATCTTTATGGTGCAGGATAAGTATAAACCTGATGTACCGCTTCAATTTCAGC
TAATACGTCTTCGCTTAACT

Product: lysophospholipid transporter LplT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGAYILLAPFVGQVADSFAKGR
VMMFANGLKLLGAASICFGINPFLGYTLVGVGAAACSPAKYGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLAD
WHVLVALAACALAYGGAVVANIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETRFSLVGTSLFWGAGVTLRFLLVL
WVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVPIFSLQHELLPAYALLMLIGVLGGF
FVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWIWQRRH

Sequences:

>Translated_396_residues
MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGAYILLAPFVGQVADSFAKGR
VMMFANGLKLLGAASICFGINPFLGYTLVGVGAAACSPAKYGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLAD
WHVLVALAACALAYGGAVVANIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETRFSLVGTSLFWGAGVTLRFLLVL
WVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVPIFSLQHELLPAYALLMLIGVLGGF
FVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWIWQRRH
>Mature_395_residues
SESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVGAYILLAPFVGQVADSFAKGRV
MMFANGLKLLGAASICFGINPFLGYTLVGVGAAACSPAKYGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLADW
HVLVALAACALAYGGAVVANIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETRFSLVGTSLFWGAGVTLRFLLVLW
VPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVPIFSLQHELLPAYALLMLIGVLGGFF
VVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWIWQRRH

Specific function: Catalyzes the facilitated diffusion of 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) into the cell [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. LplT (TC 2.A.1.42) family [H]

Homologues:

Organism=Escherichia coli, GI1789200, Length=397, Percent_Identity=97.9848866498741, Blast_Score=713, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41360; Mature: 41229

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AYILLAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAACSPAK
HHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVA
CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHEE
NIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETRFSLVGTSLFWGAGVTLRFLLVL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHHHHHHHH
WVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVPIFSL
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QHELLPAYALLMLIGVLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH
YSLAVMVGIPVVPIGIGFGALFALAITALWIWQRRH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQFYPEWSQPILQMVFVG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AYILLAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINPFLGYTLVGVGAAACSPAK
HHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
YGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLADWHVLVALAACALAYGGAVVA
CCCEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCHHEE
NIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETRFSLVGTSLFWGAGVTLRFLLVL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHHHHHHHH
WVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLVTLETVSRCMPAGILIGVVVPIFSL
HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
QHELLPAYALLMLIGVLGGFFVVPLNALLQERGKKSVGAGNAIAVQNLGENSAMLLMLGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH
YSLAVMVGIPVVPIGIGFGALFALAITALWIWQRRH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA