Click here to switch to the map view.

The map label for this gene is ppdB

Identifier: 30064167

GI number: 30064167

Start: 2918196

End: 2918759

Strand: Reverse

Name: ppdB

Synonym: S3033

Alternate gene names: 30064167

Gene position: 2918759-2918196 (Counterclockwise)

Preceding gene: 30064168

Following gene: 161486445

Centisome position: 63.46

GC content: 51.95

Gene sequence:

>564_bases
ATGCCTGTAAAAGAGCAAGGTTTTTCTCTGCTGGAAGTGTTGATTGCTATGGCGATCAGTAGCGTATTGTTGCTGGGGGC
TGCACGCTTTCTGCCTGCGTTACAGCGTGAAAGTTTAACGAGCACTCGTAAGCTGGCACTGGAAGATGAAATCTGGCTGC
GGGTATTTACCGTCGCGAAGCATCTCCAGAGGGCGGGTTATTGTCATGGCAGCTGTACCGGCGAAGGGCTGGAAATTGTC
GGACAGGGTGACTGTATCATTGTGCAGTGGGATGCGAACAGTAACGGTATCTGGGATCGCGAACCGGTAAAAGAGTCCGA
CCAGATTGGATTTCGTCTGAAGGAGCATGTGCTGGAAACGCTACGCGGTGCGACATCCTGTGAAGGTAAGGGCTGGGATA
AAGTCACTAATCCGGATGCCATCATTATCGACACTTTTCAGGTCGTACGTCAGGATGTCAGCGGCTTCTCGCCGGTGTTG
ACGGTTAATATGCGTGCTGCCAGTAAGTCTGAACCGCAAACCGTGGTGGATGCCAGCTATAGCGTGACAGGATTCAACCT
GTGA

Upstream 100 bases:

>100_bases
GGGCCGGGCATATTCGCTTCAAAAACTCAACGGGCGAGTGGTGGCTGGTGGTTTCGCCGTGGGGAAGACTCCGGCTTTAT
CAGCAAGGAGAAACAGAAGG

Downstream 100 bases:

>100_bases
ACCGCGAAAAAGGTGTTTCGTCACTGGCTCTGGTCCTGATGCTGCTGGTTTTGGGTAGCTTGCTATTGCAAGGAATGAGT
CAGCAGGATCGCAGTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQGDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVDASYSVTGFNL

Sequences:

>Translated_187_residues
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIV
GQGDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
TVNMRAASKSEPQTVVDASYSVTGFNL
>Mature_186_residues
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIVG
QGDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLT
VNMRAASKSEPQTVVDASYSVTGFNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=98.3957219251337, Blast_Score=380, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 20509; Mature: 20377

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQGDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCC
SVTGFNL
EEEECCC
>Mature Secondary Structure 
PVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRKLALEDEIWLRVFTVAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HLQRAGYCHGSCTGEGLEIVGQGDCIIVQWDANSNGIWDREPVKESDQIGFRLKEHVLET
HHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
LRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVLTVNMRAASKSEPQTVVDASY
HCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCC
SVTGFNL
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]