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The map label for this gene is yqcB

Identifier: 30064136

GI number: 30064136

Start: 2876691

End: 2877473

Strand: Reverse

Name: yqcB

Synonym: S2998

Alternate gene names: 30064136

Gene position: 2877473-2876691 (Counterclockwise)

Preceding gene: 30064137

Following gene: 30064135

Centisome position: 62.56

GC content: 53.51

Gene sequence:

>783_bases
ATGCTGGAAATACTCTATCAGGATGAATGGCTGGTTGCGGTAAATAAACCCTCCGGCTGGCTGGTTCACCGTAGCTGGCT
GGATCGCGACGAGAAAGTAGTGGTCATGCAAACCGTGCGTGACCAGATAGGACAGCATGTTTTTACTGCTCATCGTCTGG
ACCGACCCACTTCTGGTGTGTTGTTGATGGGATTATCCAGCGAGGCCGGACGGCTGCTGGCACAACAGTTTGAACAGCAC
CAAATCCAGAAACGTTACCATGCGATTGTGCGCGGCTGGTTGATGGAAGAAGCGGTGTTGGATTATCCACTGGTGGAAGA
ACTGGACAAAATCGCTGATAAATTTGCCCGCGAAGATAAAGGCCCGCAGCCAGCAGTGACGCATTATCGCGGTCTGGCGA
CCGTAGAAATGCCGGTAGCGACCGGACGTTACCCGACCACGCGCTACGGCCTGGTGGAACTGGAGCCGAAAACCGGACGC
AAACATCAGCTTCGACGACATCTTGCCCATTTGCGTCATCCGATTATTGGCGATAGCAAACATGGCGATTTACGCCAGAA
TCGCAGCGGTGCTGAGCATTTTGGCCTCCAGCGGTTAATGCTACATGCCAGTCAGTTGTCATTGACGCATCCTTTTACTG
GCGAGCCGCTGACTATTCACGCGGGCCTGGACGACACCTGGATGCAGGCGTTATCACAATTTGGCTGGCGCGGTCTGCTT
CCTGAAAATGAAAGGGTTGAGTTCAGTGCGCCATCGGGTCAGGATGGAGAGATAAGTTCCTAA

Upstream 100 bases:

>100_bases
CCTATTATGAAATGGCGCTGGCGACGGACCATCCGCAACGCGCGCTTATTCTGGCTGAGTTGGAAAAACTGGATGCTCTT
TTTGCGGATGATGCGAGCTA

Downstream 100 bases:

>100_bases
TCCAGGGAGAAAACGGTATGGCGGAAATTGGTATTTTTGTCGGCACCATGTACGGAAATTCGCTGTTAGTGGCGGAAGAA
GCAGAAGCAATTCTGACCGC

Product: tRNA pseudouridine synthase C

Products: NA

Alternate protein names: tRNA pseudouridylate synthase C; tRNA-uridine isomerase C [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
PENERVEFSAPSGQDGEISS

Sequences:

>Translated_260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
PENERVEFSAPSGQDGEISS
>Mature_260_residues
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQH
QIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
PENERVEFSAPSGQDGEISS

Specific function: Responsible for synthesis of pseudouridine from uracil- 65 in transfer RNAs [H]

COG id: COG0564

COG function: function code J; Pseudouridylate synthases, 23S RNA-specific

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rluA family [H]

Homologues:

Organism=Homo sapiens, GI221316667, Length=186, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI221316663, Length=204, Percent_Identity=30.8823529411765, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI23308689, Length=178, Percent_Identity=29.2134831460674, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1789155, Length=260, Percent_Identity=100, Blast_Score=531, Evalue=1e-152,
Organism=Escherichia coli, GI1787327, Length=233, Percent_Identity=33.4763948497854, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786244, Length=224, Percent_Identity=35.7142857142857, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788946, Length=237, Percent_Identity=28.2700421940928, Blast_Score=87, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6320168, Length=180, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324506, Length=187, Percent_Identity=26.7379679144385, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24583449, Length=186, Percent_Identity=31.7204301075269, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24583447, Length=186, Percent_Identity=31.7204301075269, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24583445, Length=186, Percent_Identity=31.7204301075269, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI19921090, Length=179, Percent_Identity=31.2849162011173, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006224
- InterPro:   IPR006145 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 29666; Mature: 29666

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS01129 PSI_RLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV
CCEEEEECCEEEEEECCCCEEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCE
LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK
CCCCHHHHHCCCEEEEECCCCCCCCCCEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
CCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCC
PENERVEFSAPSGQDGEISS
CCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure
MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGV
CCEEEEECCEEEEEECCCCEEEEHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCCE
LLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDYPLVEELDKIADKFAREDK
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
GPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSK
CCCCHHHHHCCCEEEEECCCCCCCCCCEECEEEECCCCCHHHHHHHHHHHHHCCCCCCCC
HGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLDDTWMQALSQFGWRGLL
CCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCC
PENERVEFSAPSGQDGEISS
CCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]