Definition | Shigella flexneri 2a str. 2457T, complete genome. |
---|---|
Accession | NC_004741 |
Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is insG [H]
Identifier: 30063995
GI number: 30063995
Start: 2729727
End: 2730107
Strand: Reverse
Name: insG [H]
Synonym: S2833
Alternate gene names: 30063995
Gene position: 2730107-2729727 (Counterclockwise)
Preceding gene: 30064000
Following gene: 30063994
Centisome position: 59.36
GC content: 57.48
Gene sequence:
>381_bases ATGCACATTGGACAGGCTCTTGATCTGGTATCCCGTTACGATTCTCTGCGTAACCCACTGACTTCTCTGGGGGATTACCT CGACCCCGAACTCATCTCTCGTTGCCTTGCCGAATCAGGTACTGTAACGCTACGCAAGCGCCGTCTTCCCCTCGAAATGA TGGTCTGGTGTATTGTTGGCATGGCGCTTGAGCGTAAAGAACCTCTTCACCAGATTGTGAATCGCCTGGACATCATGCTG CCGGGCAATCGCCCCTTCGTTGCCCCAGTGCCGTTATTCAGGCCCGCCAGCGCCTGGGAAGTGAGGCTGTCCGCCGCGTG TTCACGAAAACAGCGCAGCTCTGGCATAACGCCACGCCGCATCCGCACTGGTGCGGCCTGA
Upstream 100 bases:
>100_bases GGCAGCTCAAGGGCTGTAATGCCGATCAGTTAAGGATCAGTTGACCGATCCAGTGGCTGTGTAAGAATCCGGAAACGCTC ACTTGTTTCCGGATTTTTTT
Downstream 100 bases:
>100_bases CCCTGCTGGCCATCGATGGTGTGTTCTGGCGCACACCGGATACACCAGAGAACGATGCAGCCTTCCCCCGCCAGACACAT GCCGGGAACCCGGCGCTCTA
Product: IS4 orf
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 126; Mature: 126
Protein sequence:
>126_residues MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIML PGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRRIRTGAA
Sequences:
>Translated_126_residues MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIML PGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRRIRTGAA >Mature_126_residues MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIML PGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRRIRTGAA
Specific function: Involved in the transposition of the insertion sequence IS4 [H]
COG id: COG3385
COG function: function code L; FOG: Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 11 family [H]
Homologues:
Organism=Escherichia coli, GI1790729, Length=126, Percent_Identity=76.984126984127, Blast_Score=187, Evalue=2e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 - InterPro: IPR002559 [H]
Pfam domain/function: PF01609 Transposase_11 [H]
EC number: NA
Molecular weight: Translated: 14178; Mature: 14178
Theoretical pI: Translated: 10.97; Mature: 10.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHH MALERKEPLHQIVNRLDIMLPGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRR HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH IRTGAA HCCCCC >Mature Secondary Structure MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVG CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHHCCCHHHHHHHHHH MALERKEPLHQIVNRLDIMLPGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRR HHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHH IRTGAA HCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6268937; 7610040; 9278503 [H]