| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is srmB
Identifier: 30063977
GI number: 30063977
Start: 2703555
End: 2704889
Strand: Direct
Name: srmB
Synonym: S2811
Alternate gene names: 30063977
Gene position: 2703555-2704889 (Clockwise)
Preceding gene: 30063964
Following gene: 30063979
Centisome position: 58.78
GC content: 54.91
Gene sequence:
>1335_bases ATGACTGTAACGACTTTTTCCGAACTTGAACTCGACGAAAGCCTGCTGGAAGCCCTCCAGGATAAAGGTTTCACTCGCCC GACCGCCATTCAGGCTGCCGCCATTCCGCCTGCGCTCGATGGCCGTGATGTACTCGGTTCTGCGCCGACAGGCACCGGTA AAACGGCGGCGTATCTGCTGCCAGCGTTGCAGCACCTGCTCGATTTCCCACGTAAGAAATCCGGTCCGCCGCGTATTTTG ATCCTCACCCCAACTCGCGAGCTGGCGATGCAGGTGGCCGATCATGCCCGCGAACTGGCGAAACATACGCATCTGGATAT CGCCACCATCACCGGCGGCGTAGCCTATATGAACCACGCGGAAGTGTTCAGCGAAAATCAGGACATCGTGGTCGCCACGA CCGGACGTCTGCTGCAATACATAAAAGAAGAGAACTTCGATTGCCGCGCGGTTGAAACGCTGATCCTCGACGAAGCAGAC CGTATGCTGGATATGGGCTTCGCTCAGGATATCGAACATATTGCTGGCGAAACTCGCTGGCGTAAACAGACCCTGCTCTT TTCGGCAACGCTGGAAGGCGATGCGATTCAGGACTTTGCCGAGCGTCTGCTGGAAGATCCGGTGGAAGTTTCTGCCAATC CGTCCACCCGTGAGCGCAAAAAAATTCATCAGTGGTATTACCGCGCCGATGACCTGGAACATAAAACCGCATTGCTGGTG CACCTGTTAAAACAGCCTGAAGCGACTCGCTCAATCGTGTTTGTGCGTAAGCGTGAACGTGTGCATGAGCTGGCAAACTG GCTGCGCGAAGCGGGCATCAACAACTGCTATCTCGAAGGTGAGATGGTACAAGGCAAGCGTAACGAAGCAATTAAACGCC TGACCGAAGGCCGCGTAAACGTACTGGTTGCCACCGATGTTGCCGCGCGCGGTATCGACATTCCTGACGTCAGCCACGTC TTTAACTTCGATATGCCGCGCAGTGGCGATACTTATTTGCATCGTATCGGACGTACCGCGCGCGCCGGTCGTAAAGGCAC CGCAATTTCGCTGGTGGAAGCCCATGACCATTTGCTGCTGGGCAAGGTTGGCCGTTACATTGAAGAGCCGATTAAAGCTC GCGTTATTGATGAGTTACGCCCGAAAACGCGTGCGCCAAGCGAGAAGCAGACCGGCAAGCCATCGAAGAAAGTACTGGCA AAACGCGCCGAGAAGAAAAAAGCTAAAGAGAAAGAGAAGCCGCGGGTGAAAAAACGCCATCGCGACACCAAAAATATTGG TAAGCGCCGTAAACCGAGCGGAACGGGCGTGCCACCGCAAACGACAGAAGAGTAA
Upstream 100 bases:
>100_bases AGCACCGGGTGAGAACAATACCCGAGAAGCGATATCCATACAAACAGATGAAGATTGCAGCCGTAACGTCTATAATCAGC GCCCCACACAGAGGTAGAAC
Downstream 100 bases:
>100_bases TCTCAATGCCGGGTTTAAGCCCGGCATTGTTTTTTTACGCAACCACAAAACACTCTTCAACACACTGAATAAAAATGTGC ATCGCCGGGCTAACCGCTTT
Product: ATP-dependent RNA helicase SrmB
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 444; Mature: 443
Protein sequence:
>444_residues MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHV FNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE
Sequences:
>Translated_444_residues MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRIL ILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHV FNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE >Mature_443_residues TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILI LTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADR MLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVH LLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVF NFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAK RAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE
Specific function: RNA-dependent ATPase activity. Acts in 50S ribosomal subunit biogenesis at low temperatures, acting before DeaD/CsdA. Suppressor of a mutant defective in 50S ribosomal subunit assembly. Probably interacts with 23S ribosomal RNA [H]
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI224593278, Length=412, Percent_Identity=36.1650485436893, Blast_Score=245, Evalue=7e-65, Organism=Homo sapiens, GI45446747, Length=367, Percent_Identity=37.874659400545, Blast_Score=242, Evalue=4e-64, Organism=Homo sapiens, GI45446743, Length=367, Percent_Identity=37.874659400545, Blast_Score=242, Evalue=4e-64, Organism=Homo sapiens, GI20149629, Length=364, Percent_Identity=36.2637362637363, Blast_Score=239, Evalue=4e-63, Organism=Homo sapiens, GI164419743, Length=387, Percent_Identity=34.8837209302326, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI51094101, Length=387, Percent_Identity=34.8837209302326, Blast_Score=223, Evalue=4e-58, Organism=Homo sapiens, GI31542656, Length=379, Percent_Identity=37.7308707124011, Blast_Score=219, Evalue=4e-57, Organism=Homo sapiens, GI148613856, Length=356, Percent_Identity=36.2359550561798, Blast_Score=219, Evalue=4e-57, Organism=Homo sapiens, GI38201710, Length=356, Percent_Identity=36.2359550561798, Blast_Score=219, Evalue=4e-57, Organism=Homo sapiens, GI4758138, Length=364, Percent_Identity=36.2637362637363, Blast_Score=213, Evalue=2e-55, Organism=Homo sapiens, GI262118318, Length=369, Percent_Identity=34.6883468834688, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI41327771, Length=404, Percent_Identity=32.1782178217822, Blast_Score=209, Evalue=4e-54, Organism=Homo sapiens, GI262231852, Length=369, Percent_Identity=34.9593495934959, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI216548263, Length=369, Percent_Identity=34.9593495934959, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI13518015, Length=369, Percent_Identity=34.9593495934959, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI21071032, Length=360, Percent_Identity=35, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI7661920, Length=367, Percent_Identity=32.9700272479564, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI13514831, Length=360, Percent_Identity=36.3888888888889, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI41327776, Length=364, Percent_Identity=32.967032967033, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI222352149, Length=360, Percent_Identity=35, Blast_Score=202, Evalue=7e-52, Organism=Homo sapiens, GI21040371, Length=351, Percent_Identity=34.1880341880342, Blast_Score=199, Evalue=6e-51, Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=33.9673913043478, Blast_Score=197, Evalue=1e-50, Organism=Homo sapiens, GI41327773, Length=354, Percent_Identity=33.3333333333333, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI188035877, Length=373, Percent_Identity=34.0482573726542, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI55749865, Length=424, Percent_Identity=31.3679245283019, Blast_Score=194, Evalue=1e-49, Organism=Homo sapiens, GI9506931, Length=395, Percent_Identity=33.1645569620253, Blast_Score=191, Evalue=8e-49, Organism=Homo sapiens, GI4758112, Length=353, Percent_Identity=33.4277620396601, Blast_Score=191, Evalue=9e-49, Organism=Homo sapiens, GI18375623, Length=353, Percent_Identity=33.4277620396601, Blast_Score=191, Evalue=9e-49, Organism=Homo sapiens, GI169881239, Length=369, Percent_Identity=32.520325203252, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI13514809, Length=369, Percent_Identity=32.520325203252, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI301171467, Length=369, Percent_Identity=32.2493224932249, Blast_Score=189, Evalue=7e-48, Organism=Homo sapiens, GI87196351, Length=369, Percent_Identity=32.2493224932249, Blast_Score=188, Evalue=8e-48, Organism=Homo sapiens, GI301171475, Length=369, Percent_Identity=32.2493224932249, Blast_Score=188, Evalue=9e-48, Organism=Homo sapiens, GI38327634, Length=351, Percent_Identity=35.042735042735, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI38569505, Length=378, Percent_Identity=33.5978835978836, Blast_Score=182, Evalue=8e-46, Organism=Homo sapiens, GI38569503, Length=378, Percent_Identity=33.5978835978836, Blast_Score=182, Evalue=8e-46, Organism=Homo sapiens, GI6005743, Length=390, Percent_Identity=33.0769230769231, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI8922886, Length=390, Percent_Identity=32.8205128205128, Blast_Score=180, Evalue=2e-45, Organism=Homo sapiens, GI13129006, Length=383, Percent_Identity=32.1148825065274, Blast_Score=179, Evalue=4e-45, Organism=Homo sapiens, GI83700235, Length=360, Percent_Identity=32.7777777777778, Blast_Score=172, Evalue=5e-43, Organism=Homo sapiens, GI4503529, Length=356, Percent_Identity=32.0224719101124, Blast_Score=171, Evalue=2e-42, Organism=Homo sapiens, GI50659095, Length=379, Percent_Identity=31.6622691292876, Blast_Score=170, Evalue=2e-42, Organism=Homo sapiens, GI62241022, Length=369, Percent_Identity=33.0623306233062, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI41327779, Length=359, Percent_Identity=34.2618384401114, Blast_Score=165, Evalue=9e-41, Organism=Homo sapiens, GI164419732, Length=385, Percent_Identity=32.2077922077922, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI62241024, Length=348, Percent_Identity=32.4712643678161, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI17505907, Length=407, Percent_Identity=29.97542997543, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI256223453, Length=356, Percent_Identity=30.8988764044944, Blast_Score=153, Evalue=3e-37, Organism=Homo sapiens, GI9966805, Length=347, Percent_Identity=30.2593659942363, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI154759257, Length=405, Percent_Identity=29.3827160493827, Blast_Score=136, Evalue=5e-32, Organism=Homo sapiens, GI256773275, Length=385, Percent_Identity=31.6883116883117, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI4826686, Length=333, Percent_Identity=28.2282282282282, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI20336298, Length=219, Percent_Identity=34.2465753424658, Blast_Score=109, Evalue=6e-24, Organism=Escherichia coli, GI1788930, Length=444, Percent_Identity=99.7747747747748, Blast_Score=907, Evalue=0.0, Organism=Escherichia coli, GI87082221, Length=411, Percent_Identity=40.3892944038929, Blast_Score=275, Evalue=5e-75, Organism=Escherichia coli, GI1787016, Length=369, Percent_Identity=39.2953929539295, Blast_Score=258, Evalue=4e-70, Organism=Escherichia coli, GI1790214, Length=383, Percent_Identity=37.8590078328982, Blast_Score=239, Evalue=3e-64, Organism=Escherichia coli, GI1787605, Length=352, Percent_Identity=38.3522727272727, Blast_Score=206, Evalue=3e-54, Organism=Caenorhabditis elegans, GI17552642, Length=369, Percent_Identity=38.2113821138211, Blast_Score=245, Evalue=3e-65, Organism=Caenorhabditis elegans, GI17555296, Length=353, Percent_Identity=38.5269121813031, Blast_Score=240, Evalue=1e-63, Organism=Caenorhabditis elegans, GI17510559, Length=386, Percent_Identity=34.4559585492228, Blast_Score=229, Evalue=2e-60, Organism=Caenorhabditis elegans, GI71999646, Length=369, Percent_Identity=37.1273712737127, Blast_Score=226, Evalue=1e-59, Organism=Caenorhabditis elegans, GI86570094, Length=372, Percent_Identity=37.0967741935484, Blast_Score=226, Evalue=2e-59, Organism=Caenorhabditis elegans, GI71999644, Length=369, Percent_Identity=37.1273712737127, Blast_Score=225, Evalue=3e-59, Organism=Caenorhabditis elegans, GI115533224, Length=358, Percent_Identity=36.8715083798883, Blast_Score=219, Evalue=2e-57, Organism=Caenorhabditis elegans, GI71995724, Length=369, Percent_Identity=34.4173441734417, Blast_Score=217, Evalue=8e-57, Organism=Caenorhabditis elegans, GI17507121, Length=370, Percent_Identity=34.0540540540541, Blast_Score=217, Evalue=1e-56, Organism=Caenorhabditis elegans, GI17507877, Length=382, Percent_Identity=35.8638743455497, Blast_Score=211, Evalue=5e-55, Organism=Caenorhabditis elegans, GI17507945, Length=397, Percent_Identity=35.0125944584383, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI17510307, Length=366, Percent_Identity=34.6994535519126, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI71995514, Length=366, Percent_Identity=34.6994535519126, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17507879, Length=380, Percent_Identity=35.5263157894737, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17510309, Length=366, Percent_Identity=34.6994535519126, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI32565321, Length=382, Percent_Identity=33.2460732984293, Blast_Score=203, Evalue=1e-52, Organism=Caenorhabditis elegans, GI71987143, Length=367, Percent_Identity=32.1525885558583, Blast_Score=203, Evalue=1e-52, Organism=Caenorhabditis elegans, GI17552114, Length=381, Percent_Identity=32.8083989501312, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI17509811, Length=405, Percent_Identity=34.8148148148148, Blast_Score=201, Evalue=7e-52, Organism=Caenorhabditis elegans, GI17507881, Length=379, Percent_Identity=33.245382585752, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI71995718, Length=368, Percent_Identity=33.9673913043478, Blast_Score=192, Evalue=2e-49, Organism=Caenorhabditis elegans, GI17537549, Length=359, Percent_Identity=33.4261838440111, Blast_Score=191, Evalue=5e-49, Organism=Caenorhabditis elegans, GI115532546, Length=399, Percent_Identity=34.0852130325814, Blast_Score=191, Evalue=5e-49, Organism=Caenorhabditis elegans, GI115532548, Length=428, Percent_Identity=33.411214953271, Blast_Score=191, Evalue=8e-49, Organism=Caenorhabditis elegans, GI17505370, Length=360, Percent_Identity=35.5555555555556, Blast_Score=189, Evalue=2e-48, Organism=Caenorhabditis elegans, GI17507641, Length=386, Percent_Identity=33.9378238341969, Blast_Score=189, Evalue=3e-48, Organism=Caenorhabditis elegans, GI71982858, Length=353, Percent_Identity=31.728045325779, Blast_Score=179, Evalue=2e-45, Organism=Caenorhabditis elegans, GI32564046, Length=373, Percent_Identity=33.7801608579088, Blast_Score=179, Evalue=2e-45, Organism=Caenorhabditis elegans, GI193206561, Length=352, Percent_Identity=32.3863636363636, Blast_Score=175, Evalue=4e-44, Organism=Caenorhabditis elegans, GI25148203, Length=440, Percent_Identity=27.2727272727273, Blast_Score=165, Evalue=5e-41, Organism=Caenorhabditis elegans, GI193208216, Length=381, Percent_Identity=32.0209973753281, Blast_Score=163, Evalue=2e-40, Organism=Caenorhabditis elegans, GI71990816, Length=377, Percent_Identity=31.8302387267904, Blast_Score=162, Evalue=3e-40, Organism=Caenorhabditis elegans, GI17556951, Length=368, Percent_Identity=32.0652173913043, Blast_Score=155, Evalue=5e-38, Organism=Caenorhabditis elegans, GI17536099, Length=384, Percent_Identity=29.6875, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17536101, Length=384, Percent_Identity=29.6875, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17536103, Length=388, Percent_Identity=29.639175257732, Blast_Score=151, Evalue=6e-37, Organism=Caenorhabditis elegans, GI17508543, Length=382, Percent_Identity=27.2251308900524, Blast_Score=149, Evalue=3e-36, Organism=Caenorhabditis elegans, GI17553716, Length=348, Percent_Identity=28.1609195402299, Blast_Score=144, Evalue=7e-35, Organism=Caenorhabditis elegans, GI25148205, Length=366, Percent_Identity=26.2295081967213, Blast_Score=118, Evalue=6e-27, Organism=Caenorhabditis elegans, GI71997889, Length=373, Percent_Identity=26.5415549597855, Blast_Score=111, Evalue=6e-25, Organism=Caenorhabditis elegans, GI71982862, Length=218, Percent_Identity=30.2752293577982, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17565430, Length=381, Percent_Identity=26.246719160105, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI25148291, Length=385, Percent_Identity=24.1558441558442, Blast_Score=98, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71987152, Length=95, Percent_Identity=41.0526315789474, Blast_Score=81, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6323021, Length=354, Percent_Identity=37.2881355932203, Blast_Score=244, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6324217, Length=365, Percent_Identity=35.3424657534247, Blast_Score=224, Evalue=2e-59, Organism=Saccharomyces cerevisiae, GI6325138, Length=373, Percent_Identity=35.1206434316354, Blast_Score=221, Evalue=2e-58, Organism=Saccharomyces cerevisiae, GI6321360, Length=369, Percent_Identity=36.5853658536585, Blast_Score=214, Evalue=2e-56, Organism=Saccharomyces cerevisiae, GI6324778, Length=374, Percent_Identity=34.2245989304813, Blast_Score=213, Evalue=4e-56, Organism=Saccharomyces cerevisiae, GI6320173, Length=446, Percent_Identity=31.390134529148, Blast_Score=213, Evalue=7e-56, Organism=Saccharomyces cerevisiae, GI6321856, Length=373, Percent_Identity=35.3887399463807, Blast_Score=211, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6320041, Length=359, Percent_Identity=35.3760445682451, Blast_Score=211, Evalue=3e-55, Organism=Saccharomyces cerevisiae, GI6323947, Length=362, Percent_Identity=37.292817679558, Blast_Score=206, Evalue=9e-54, Organism=Saccharomyces cerevisiae, GI6320224, Length=366, Percent_Identity=32.2404371584699, Blast_Score=198, Evalue=2e-51, Organism=Saccharomyces cerevisiae, GI6322912, Length=355, Percent_Identity=34.9295774647887, Blast_Score=197, Evalue=3e-51, Organism=Saccharomyces cerevisiae, GI6322323, Length=355, Percent_Identity=34.9295774647887, Blast_Score=197, Evalue=3e-51, Organism=Saccharomyces cerevisiae, GI6322427, Length=358, Percent_Identity=34.0782122905028, Blast_Score=196, Evalue=7e-51, Organism=Saccharomyces cerevisiae, GI6319618, Length=414, Percent_Identity=31.4009661835749, Blast_Score=193, Evalue=4e-50, Organism=Saccharomyces cerevisiae, GI6320449, Length=384, Percent_Identity=32.8125, Blast_Score=189, Evalue=8e-49, Organism=Saccharomyces cerevisiae, GI6321963, Length=370, Percent_Identity=35.4054054054054, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6320119, Length=367, Percent_Identity=32.6975476839237, Blast_Score=181, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6323306, Length=413, Percent_Identity=28.8135593220339, Blast_Score=175, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6319714, Length=449, Percent_Identity=29.8440979955457, Blast_Score=173, Evalue=6e-44, Organism=Saccharomyces cerevisiae, GI6321267, Length=366, Percent_Identity=33.879781420765, Blast_Score=169, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6324620, Length=373, Percent_Identity=30.5630026809651, Blast_Score=167, Evalue=3e-42, Organism=Saccharomyces cerevisiae, GI6321111, Length=351, Percent_Identity=31.9088319088319, Blast_Score=159, Evalue=1e-39, Organism=Saccharomyces cerevisiae, GI6320400, Length=374, Percent_Identity=31.5508021390374, Blast_Score=155, Evalue=1e-38, Organism=Saccharomyces cerevisiae, GI6324366, Length=354, Percent_Identity=24.8587570621469, Blast_Score=110, Evalue=3e-25, Organism=Saccharomyces cerevisiae, GI6322876, Length=182, Percent_Identity=28.021978021978, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356161, Length=447, Percent_Identity=36.0178970917226, Blast_Score=265, Evalue=5e-71, Organism=Drosophila melanogaster, GI24662330, Length=368, Percent_Identity=38.5869565217391, Blast_Score=255, Evalue=5e-68, Organism=Drosophila melanogaster, GI24584399, Length=351, Percent_Identity=36.4672364672365, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI28574962, Length=352, Percent_Identity=38.0681818181818, Blast_Score=228, Evalue=6e-60, Organism=Drosophila melanogaster, GI24585582, Length=353, Percent_Identity=35.4107648725212, Blast_Score=224, Evalue=7e-59, Organism=Drosophila melanogaster, GI18857967, Length=368, Percent_Identity=35.5978260869565, Blast_Score=221, Evalue=9e-58, Organism=Drosophila melanogaster, GI24644479, Length=363, Percent_Identity=33.6088154269972, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI24644487, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI45551833, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI24644485, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI24644483, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI281361218, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=2e-57, Organism=Drosophila melanogaster, GI24644481, Length=363, Percent_Identity=33.6088154269972, Blast_Score=220, Evalue=2e-57, Organism=Drosophila melanogaster, GI24642151, Length=370, Percent_Identity=34.5945945945946, Blast_Score=216, Evalue=2e-56, Organism=Drosophila melanogaster, GI24583281, Length=374, Percent_Identity=35.2941176470588, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI24583279, Length=374, Percent_Identity=35.2941176470588, Blast_Score=216, Evalue=3e-56, Organism=Drosophila melanogaster, GI24645031, Length=370, Percent_Identity=33.7837837837838, Blast_Score=210, Evalue=1e-54, Organism=Drosophila melanogaster, GI28575014, Length=360, Percent_Identity=35.8333333333333, Blast_Score=209, Evalue=4e-54, Organism=Drosophila melanogaster, GI21355075, Length=376, Percent_Identity=33.5106382978723, Blast_Score=208, Evalue=7e-54, Organism=Drosophila melanogaster, GI17977678, Length=360, Percent_Identity=34.7222222222222, Blast_Score=207, Evalue=1e-53, Organism=Drosophila melanogaster, GI17985987, Length=373, Percent_Identity=33.5120643431635, Blast_Score=199, Evalue=3e-51, Organism=Drosophila melanogaster, GI24584994, Length=434, Percent_Identity=30.8755760368664, Blast_Score=199, Evalue=5e-51, Organism=Drosophila melanogaster, GI28571808, Length=362, Percent_Identity=33.9779005524862, Blast_Score=188, Evalue=5e-48, Organism=Drosophila melanogaster, GI28571809, Length=362, Percent_Identity=33.9779005524862, Blast_Score=188, Evalue=5e-48, Organism=Drosophila melanogaster, GI24642822, Length=368, Percent_Identity=33.695652173913, Blast_Score=188, Evalue=8e-48, Organism=Drosophila melanogaster, GI281365720, Length=312, Percent_Identity=36.8589743589744, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI17136814, Length=398, Percent_Identity=32.6633165829146, Blast_Score=184, Evalue=8e-47, Organism=Drosophila melanogaster, GI24581954, Length=362, Percent_Identity=32.3204419889503, Blast_Score=180, Evalue=2e-45, Organism=Drosophila melanogaster, GI24581952, Length=362, Percent_Identity=32.3204419889503, Blast_Score=180, Evalue=2e-45, Organism=Drosophila melanogaster, GI24581956, Length=362, Percent_Identity=32.3204419889503, Blast_Score=180, Evalue=2e-45, Organism=Drosophila melanogaster, GI24643725, Length=381, Percent_Identity=32.8083989501312, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24582080, Length=368, Percent_Identity=31.5217391304348, Blast_Score=171, Evalue=9e-43, Organism=Drosophila melanogaster, GI24582078, Length=368, Percent_Identity=31.5217391304348, Blast_Score=171, Evalue=9e-43, Organism=Drosophila melanogaster, GI17136248, Length=368, Percent_Identity=31.5217391304348, Blast_Score=171, Evalue=9e-43, Organism=Drosophila melanogaster, GI24582075, Length=368, Percent_Identity=31.5217391304348, Blast_Score=171, Evalue=9e-43, Organism=Drosophila melanogaster, GI20130173, Length=454, Percent_Identity=28.6343612334802, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI17647335, Length=362, Percent_Identity=31.4917127071823, Blast_Score=167, Evalue=2e-41, Organism=Drosophila melanogaster, GI24666101, Length=365, Percent_Identity=32.8767123287671, Blast_Score=166, Evalue=3e-41, Organism=Drosophila melanogaster, GI21355559, Length=385, Percent_Identity=32.4675324675325, Blast_Score=162, Evalue=5e-40, Organism=Drosophila melanogaster, GI17136666, Length=398, Percent_Identity=29.8994974874372, Blast_Score=148, Evalue=6e-36, Organism=Drosophila melanogaster, GI19920478, Length=413, Percent_Identity=30.0242130750605, Blast_Score=145, Evalue=5e-35, Organism=Drosophila melanogaster, GI18859659, Length=411, Percent_Identity=27.4939172749392, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI28571338, Length=411, Percent_Identity=27.4939172749392, Blast_Score=132, Evalue=5e-31, Organism=Drosophila melanogaster, GI24640164, Length=388, Percent_Identity=27.0618556701031, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI24668515, Length=336, Percent_Identity=28.2738095238095, Blast_Score=111, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 49899; Mature: 49768
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCHHCCCCCCCCCCHHHHHH PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW HHHCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV HHHHEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCEE VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL EEEEECHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH RDTKNIGKRRKPSGTGVPPQTTEE CCHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLL CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCCHHCCCCCCCCCCHHHHHH PALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKHTHLDIATITGGVAYMNHA HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHH EVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW HHHCCCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH RKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLV HHHHEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH HLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHCCHHHHHHHHHHCCCEE VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLL EEEEECHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHH GKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLAKRAEKKKAKEKEKPRVKKRH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH RDTKNIGKRRKPSGTGVPPQTTEE CCHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2461520; 9278503 [H]