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The map label for this gene is intR [H]

Identifier: 30063293

GI number: 30063293

Start: 1901037

End: 1901642

Strand: Direct

Name: intR [H]

Synonym: S1963

Alternate gene names: 30063293

Gene position: 1901037-1901642 (Clockwise)

Preceding gene: 30063290

Following gene: 30063294

Centisome position: 41.33

GC content: 47.69

Gene sequence:

>606_bases
ATGGAAAGTGAAAAAGGACAGAGCCAAAACTTGTGGAAATTTGCCGTTTACTCCGGGCTTCGTCACGGGGAACTGGCAGC
TCTGGCGTGGGAGGATGTGGATTTCGAGAAGGGAATTGTGAATGTCAGAAGAAACCTGACGATACTTGATATGTTCGGTC
CCCCAAAAACAAATGCCGGGATCCGGACGGTAGCATTACTGCAGCCGGCTCTTGAAGCACTGAAGGAGCAATACAAACTG
ACCGGGCATCATCGCAAAAGCGAAATCACTTTTTATCATCGGGAGTACGGCAGAACTGAAAAACAAAAACTGCATTTTGT
TTTCATGCCCAGGGTGTGTAACGAAAAACAGAAACCTTATTACTCGGTAAGCAGTTTGGGTACAAGATGGAATGCAGCAG
TAAAACGTGCTGGTATTCGCCGCCGTAATCCGTACCATACGCGACATACTTTTGCCTGCTGGCTGTTGACGGCAGGAGCG
AACCCGGCATTTATAGCCAGCCAGATGGGGCATGAAACTGCGCAAATGGTGTATGAAATTTACGGTATGTGGATTGATGA
CATGAACGACGAACAGATAGCCATGTTGAATGCGCGGTTATCGTAG

Upstream 100 bases:

>100_bases
ATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCTGACCCGTTATCTA
AAACAGAATTCAATGCATTA

Downstream 100 bases:

>100_bases
TTGCAAAGTTTGCCCCCAATTTGCCCCATTTAGTACCAGAGAACTGAAATAATGCAAGAAAATCAACAAATTACAAAGAA
AGAACAATACAACCTGAACA

Product: putative integrase for prophage CP-933R

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKL
TGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGA
NPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS

Sequences:

>Translated_201_residues
MESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKL
TGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGA
NPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
>Mature_201_residues
MESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKL
TGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGA
NPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=201, Percent_Identity=98.0099502487562, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23223; Mature: 23223

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAG
CCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCC
IRTVALLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCHHEEEEEECCHHCCCCCCCE
YSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEI
EEHHHHCCHHHHHHHHHCCCCCCCCCCHHEEEEEEEECCCCHHHHHHHHCHHHHHHHHHH
YGMWIDDMNDEQIAMLNARLS
HHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAG
CCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEECCCCCCCCCC
IRTVALLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPY
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCHHEEEEEECCHHCCCCCCCE
YSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEI
EEHHHHCCHHHHHHHHHCCCCCCCCCCHHEEEEEEEECCCCHHHHHHHHCHHHHHHHHHH
YGMWIDDMNDEQIAMLNARLS
HHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]