Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is pykA
Identifier: 30063265
GI number: 30063265
Start: 1870718
End: 1872160
Strand: Direct
Name: pykA
Synonym: S1930
Alternate gene names: 30063265
Gene position: 1870718-1872160 (Clockwise)
Preceding gene: 30063264
Following gene: 30063269
Centisome position: 40.67
GC content: 52.6
Gene sequence:
>1443_bases ATGTCCAAAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGT TATCGCGGCGGGTGCCAACGTTGTACGTATGAACTTTTCTCACGGCTCGCCTGAAGATCACAAAATGCGCGCGGATAAAG TTCGTGAGATTGCCGCAAAACTGGGGCGTCATGTGGCTATTCTGGGTGACCTCCAGGGGCCCAAAATCCGTGTATCCACC TTTAAAGAAGGCAAAGTTTTCCTCAATATTGGGGATAAATTCCTGCTCGACGCCAACCTGGGTAAAGGTGAAGGCGACAA AGAAAAAGTCGGTATCGACTACAAAGGCCTGCCTACTGACGTCGTGCCTGGTGACATCCTGCTGCTGGACGATGGTCGCG TCCAGTTAAAAGTACTGGAAGTTCAGGGCATGAAAGTGTTCACCGAAGTCACCGTCGGTGGTCCCCTCTCCAACAATAAA GGTATCAACAAACTTGGCGGCGGTTTGTCGGCTGAAGCGCTGACCGAAAAAGACAAAGCAGACATTAAGACTGCGGCGTT GATTGGCGTAGATTACCTGGCTGTCTCCTTCCCACGCTGTGGCGAAGATCTGAACTATGCCCGTCGCCTGGCACGCGATG CAGGATGTGATGCGAAAATTGTTGCCAAGGTTGAACGTGCGGAAGCCGTTTGCAGCCAGGATGCAATGGATGACATCATC CTCGCCTCTGACGTGGTAATGGTTGCACGTGGCGACCTCGGTGTGGAAATTGGCGACCCGGAACTGGTCGGCATTCAGAA AGCGTTGATCCGTCGTGCGCGTCAGCTAAACCGAGCGGTAATCACGGCGACCCAGATGATGGAGTCAATGATTACTAACC CGATGCCGACGCGTGCAGAAGTCATGGACGTAGCAAACGCCGTTCTGGATGGTACTGACGCTGTGATGCTGTCTGCAGAA ACTGCCGCTGGGCAGTATCCGTCAGAAACTGTTGCAGCCATGGCGCGCGTTTGCCTGGGTGCGGAAAAAATCCCGAGCAT CAACGTTTCTAAACACCGTCTGGACGTTCAGTTCGACAATGTGGAAGAAGCTATTGCCATGTCGGCAATGTACGCAGCTA ACCACCTGAAGGGCGTTACGGCGATCATTACCATGACCGAATCGGGTCGTACCGCGCTGATGACCTCCCGTATCAGCTCT GGTCTACCAATTTTCGCCATGTCGCGCCATGAACGTACGCTGAACCTGACTGCTCTCTATCGTGGCGTTACGCCGGTGCC CTTTGATAGCGCTAATGACGGCGTAGCAGCTGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTG GTGACCTGGTGATTGTCACCCAAGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAG TAA
Upstream 100 bases:
>100_bases ACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGT TTCAGTCAACGGAGTATTAC
Downstream 100 bases:
>100_bases GTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTATAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAG CAAACTTGAACTTATCATCA
Product: pyruvate kinase
Products: NA
Alternate protein names: PK-2 [H]
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MSKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVST FKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPTDVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAE TAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISS GLPIFAMSRHERTLNLTALYRGVTPVPFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE
Sequences:
>Translated_480_residues MSKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVST FKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPTDVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAE TAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISS GLPIFAMSRHERTLNLTALYRGVTPVPFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE >Mature_479_residues SKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTF KEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPTDVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKG INKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDIIL ASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAET AAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSG LPIFAMSRHERTLNLTALYRGVTPVPFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286422, Length=502, Percent_Identity=37.2509960159363, Blast_Score=252, Evalue=7e-67, Organism=Homo sapiens, GI33286420, Length=502, Percent_Identity=37.2509960159363, Blast_Score=252, Evalue=7e-67, Organism=Homo sapiens, GI33286418, Length=495, Percent_Identity=37.3737373737374, Blast_Score=248, Evalue=7e-66, Organism=Homo sapiens, GI10835121, Length=493, Percent_Identity=34.8884381338742, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI32967597, Length=494, Percent_Identity=35.2226720647773, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI310128732, Length=290, Percent_Identity=35.8620689655172, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI310128730, Length=290, Percent_Identity=35.8620689655172, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI310128736, Length=239, Percent_Identity=33.8912133891213, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI310128734, Length=239, Percent_Identity=33.8912133891213, Blast_Score=108, Evalue=8e-24, Organism=Homo sapiens, GI310128738, Length=215, Percent_Identity=33.4883720930233, Blast_Score=92, Evalue=1e-18, Organism=Escherichia coli, GI1788160, Length=480, Percent_Identity=99.375, Blast_Score=962, Evalue=0.0, Organism=Escherichia coli, GI1787965, Length=488, Percent_Identity=37.0901639344262, Blast_Score=281, Evalue=6e-77, Organism=Caenorhabditis elegans, GI17544584, Length=489, Percent_Identity=36.40081799591, Blast_Score=258, Evalue=4e-69, Organism=Caenorhabditis elegans, GI17506829, Length=494, Percent_Identity=37.246963562753, Blast_Score=243, Evalue=2e-64, Organism=Caenorhabditis elegans, GI71984413, Length=494, Percent_Identity=37.246963562753, Blast_Score=243, Evalue=2e-64, Organism=Caenorhabditis elegans, GI71984406, Length=494, Percent_Identity=37.246963562753, Blast_Score=242, Evalue=2e-64, Organism=Caenorhabditis elegans, GI17506831, Length=494, Percent_Identity=37.246963562753, Blast_Score=242, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6319279, Length=490, Percent_Identity=36.1224489795918, Blast_Score=254, Evalue=2e-68, Organism=Saccharomyces cerevisiae, GI6324923, Length=499, Percent_Identity=34.8697394789579, Blast_Score=250, Evalue=3e-67, Organism=Drosophila melanogaster, GI24648964, Length=494, Percent_Identity=37.246963562753, Blast_Score=265, Evalue=6e-71, Organism=Drosophila melanogaster, GI28571814, Length=494, Percent_Identity=37.246963562753, Blast_Score=264, Evalue=9e-71, Organism=Drosophila melanogaster, GI24648966, Length=418, Percent_Identity=36.1244019138756, Blast_Score=230, Evalue=1e-60, Organism=Drosophila melanogaster, GI24581235, Length=491, Percent_Identity=32.1792260692464, Blast_Score=225, Evalue=4e-59, Organism=Drosophila melanogaster, GI24646914, Length=272, Percent_Identity=36.0294117647059, Blast_Score=140, Evalue=2e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51320; Mature: 51189
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS00110 PYRUVATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAK CCCCHHHHEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH LGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPTD HCCEEEEEECCCCCEEEEEEECCCEEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCCC VVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKA CCCCCEEEEECCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHCCCCCHHHHCCCHHH DIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII HHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAE HHCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH VMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDN HHHHHHHHHCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCEEEEEEECC VEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALY HHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHCCCCCEEEECCCCCEEEEEEEE RGVTPVPFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCHHHHCCCCCCEEEEEEC >Mature Secondary Structure SKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAK CCCHHHHEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH LGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPTD HCCEEEEEECCCCCEEEEEEECCCEEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCCC VVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKA CCCCCEEEEECCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHCCCCCHHHHCCCHHH DIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDII HHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAE HHCCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH VMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDN HHHHHHHHHCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCEEEEEEECC VEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALY HHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEHHHHCCCCCEEEECCCCCEEEEEEEE RGVTPVPFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCHHHHCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 1732206; 1859631; 8439398 [H]