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The map label for this gene is yddB

Identifier: 30063211

GI number: 30063211

Start: 1800872

End: 1803232

Strand: Direct

Name: yddB

Synonym: S1861

Alternate gene names: 30063211

Gene position: 1800872-1803232 (Clockwise)

Preceding gene: 30063210

Following gene: 30063214

Centisome position: 39.15

GC content: 45.66

Gene sequence:

>2361_bases
ATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTGATGTGGCGCAGGCCGTCGATGACAAAAACATGTACAT
GTATTTTTTTGAAGAGATGACGGTCTATGCTCCTGTCCCTGTACCCGTAAACGGCAACACGCATTACACCAGTGAAAGCA
TCGAGCGTTTACCGACCGGGAATGGCAATATCAGCGATCTGCTGAGAACCAACCCTGCGGTACGCATGGATTCAACGCAA
AGTACCTCGTTGAACCAGGGAGATATTCGCCCTGAGAAAATCTCTATTCACGGTGCGTCGCCCTACCAGAATGCCTATTT
GATTGACGGTATTAGTGCAACTAATAACCTGAACCCAGCGAATGAGTCCGATGCCAGTAGTGCAACCAATATTAGCGGGA
TGTCACAGGGGTATTATCTTGATGTCAGCTTACTGGACAATGTGACGCTTTATGACAGTTTTGTGCCGGTTGAATTTGGT
CGCTTCAATGGCGGGGTAATTGATGCAAAGATCAAACGCTTCAACGCTGATGATAGCAAGGTGAAATTGGGTTATCGCAC
TACGCGTTTGGACTGGTTAACATCGCATATCGATGAGAATAACAAGAGCGCATTTAATCAAGGTTCTTCAGGAAGTACCT
ATTTCTCTCCAGATTTTAAAAAGAACTTTTATACCTTGTCGTTTAATCAGGAGCTGGCTGATAACTTTGGCGTTACCGCC
GGTTTATCGCGCCGCCAGTCTGATATCACCCGCGCGGATTATGTTTCGAATGACGGCATTGTCGCCGGTCGGGCACAGTA
TAAAAACGTTATCGATACTGCATTGAGCAAATTTACCTGGTTTGCCAGCGACCGCTTTACCCACGATTTAACCTTAAAAT
ATACCGGCTCCAGCCGTGATTATAATACCAGCACCTTCCCGCAGTCTGATCGCGAAATGGGTAATAAATCCTATGGTCTG
GCATGGGATATGGATACGCAACTCGCATGGGCCAAACTACGTACCACCGTTGGTTGGGATCATATTAGTGATTATACCCG
TCACGATCATGACATCTGGTACACCGAACTTTCATGTACATATGGTGATATTACAGGGCGTTGTACCCGTGGCGGATTAG
GACACATTTCCCAGGCTGTAGATAATTACACCTTCAAAACACGCCTGGACTGGCAAAAATTCGCCGTGGGTGATGTTTCG
CATCAACCCTACTTCGGCGCGGAATACATCTATTCCGATGCATGGACTGAACGCCATAACCAGTCTGAATCCTATGTGAT
TAATGCTGCAGGAAAGAAAACTAACCATACCATTTACCATAAAGGTAAAGGCAGCCTGGGAATTGACAACTACACGCTGT
ATATGGCGGATCACATTAGCTGGCGGAATGTGTCGTTAATGCCCGGTGTGCGTTATGACTATGACAACTATCTGTCAAAC
CACAATATCTCCCCGCGCTTTATGACGGAATGGGATATTTTTGCTGATCAAACCTCAATGATTACCGCCGGTTATAACCG
TTACTATGGCGGGAATATTCTTGATATGGGATTACGTGATATCCGCAATAGCTGGACGGAATCGGTATCAGGTAATAAAA
CCCTGACGCGTTATCAGAATTTGAAAACGCCTTATAACGATGAACTGGCAATGGGATTGCAGCAAAAAATCGATAAGAAC
GTTATTGCACGCGCAAGTGAAGCGCATGATCAAATCAGCAAAAGCAGTCGTACCGACAGCGCGACTAAAACCACCATTAC
TGAATATAACAACGATGGCAAAACCAAAACGCATTCGTTTAACCTCAGTTTTGAACTGGCCGAACCCCTGCATATCCGCC
AGGTAGATATTAACCCGCAAATTGTCTTTAGCTATATCAAGAGCAAGGGCAACTTGTCGTTAAACAATGGTTATGAGGAG
AGCAATACCGGTGATAACCAGGTGGTTTATAACGGTAATCTGGTCTCTTACGATAGCGTTCCAGTGGCAGATTTTAATAA
CCCATTAAAGATCTCCTTAAACATGGATTTCACGCATCAACCGAGCGGGTTAGTGTGGGCGAATACGCTGGCCTGGCAAG
AAGCGCGTAAAGCTCGCATTATCCTTGGTAAGACAAATGCGCAATACATCAGCGAATATTCAGATTACAAGCAGTATGTT
GACGAAAAACTGGATAGCAGCCTGACCTGGGACACCCGCTTGTCCTGGACGCCACAATTTCTGAAACAACAAAACCTGAC
GATCAGTGCCGATATTCTCAATGTACTGGATAGCAAAACCGCTGTTGATACAACGAACACCGGTGTGGCGACCTACGCCA
GTGGCCGTACTTTCTGGCTTGATGTCAGCATGAAATTTTAA

Upstream 100 bases:

>100_bases
ACACATCAACCCGGTGTCTGGAACCTGGCTGATGATATTTGTGACATTAGCACGGTTTTATAACAACAATAAAAGCCCTG
CTGTACGGAGATATAAATAA

Downstream 100 bases:

>100_bases
TAGTTCGGATTTTACTTAACCGGGTAAATTCGCCCGGTTTTCGCATGGAGATAATTATGAGAAACCTCTGTTTCTTACTG
ACGTTAGTGGCAACTCTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: CDS103 [H]

Number of amino acids: Translated: 786; Mature: 786

Protein sequence:

>786_residues
MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIDKN
VIARASEAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEE
SNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYV
DEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Sequences:

>Translated_786_residues
MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIDKN
VIARASEAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEE
SNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYV
DEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
>Mature_786_residues
MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIDKN
VIARASEAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEE
SNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYV
DEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1369 [H]

Homologues:

Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=97.9746835443038, Blast_Score=1600, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 88709; Mature: 88709

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCCEEEEEEECEEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE
VKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEEEHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVSHQPYFGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHEEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQN
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHC
LKTPYNDELAMGLQQKIDKNVIARASEAHDQISKSSRTDSATKTTITEYNNDGKTKTHSF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEE
NLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSV
EEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEEECCC
PVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYV
CCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH
DEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWL
HHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCEEEEE
DVSMKF
EEEECC
>Mature Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCCEEEEEEECEEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE
VKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEEEHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVSHQPYFGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHEEECCCCCCCCCCHHHEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQN
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHC
LKTPYNDELAMGLQQKIDKNVIARASEAHDQISKSSRTDSATKTTITEYNNDGKTKTHSF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEE
NLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSV
EEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEEECCC
PVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYV
CCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHH
DEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWL
HHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCEEEEE
DVSMKF
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]