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The map label for this gene is ydjF [H]

Identifier: 30062967

GI number: 30062967

Start: 1526272

End: 1527030

Strand: Direct

Name: ydjF [H]

Synonym: S1568

Alternate gene names: 30062967

Gene position: 1526272-1527030 (Clockwise)

Preceding gene: 30062966

Following gene: 30062968

Centisome position: 33.18

GC content: 42.42

Gene sequence:

>759_bases
GTGGCGGCAAAAGACAGGATTCAGGCAATTAAGCAAATGGTTGCCAACGATAAAAAGGTGACAGTCTCAAATTTGAGTGG
GATTTTTCAGGTAACCGAAGAAACCATTCGCCGCGATCTTGAGAAGCTGGAAGATGAAGGCTTTTTGACCAGAACCTATG
GTGGTGCTGTTTTAAATACAGCGGTGTTGACGGAGAATATCCATTTTTATAAGCGCGCTTCATCGTTTTATGAAGAGAAG
CTGCTTATTGCACGCAAGGCACTACCCTTTATCGACAATAAAACCACCATGGCAGCCGATTCCAGTAGTACCGTAATGGA
ATTGCTCAAATTGTTACAGGACCGTAGTGACCTGACGTTGCTAACCAACTCGGCGGAAGCGATTCATGTTCTGGCTCAGT
CAGAAATTAAAGTCGTTTCAACGGGTGGGGAACTAAACAAAAATACACTTTCCCTGCAAGGAAGAATTACTAAAGAGATC
ATCAGCCGCTACCATGTCGATATCATGGTAATGAGTTGTAAAGGTCTTGATATTAACAGCGGCGCGCTGGACTCTAATGA
AGCGGAAGCTGAAATCAAAAAGACAATGATCCGTCAGGCGACAGAAGTTGCGTTATTGGTTGATCACTCTAAGTTTGATC
GTAAAGCTTTTGTCCAGTTAGCTGACTTTAGTCATATTAATTATATAATAACTGATAAATCACCGGGTGCAGAGTGGATA
GCATTTTGCAAAGACAATAATATCCAGCTGGTGTGGTAA

Upstream 100 bases:

>100_bases
TGTGATGAAAATCTGTGATTCAAATAGGTTATTTTGAAAGTAAACATCGGTTATGCGATAATCGCGCTAATGTGATGTAA
AAAGATACAGGGGTGTAATC

Downstream 100 bases:

>100_bases
TTTAAGCACACGTTGTCAATATTATTTGTTCCTGCGACTGGAAATAAAATGATGATAAAGATGCGGCAAGTGAATTTGCC
GCAATTGCTACCTTTTATAG

Product: putative DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAVLTENIHFYKRASSFYEEK
LLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
ISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
AFCKDNNIQLVW

Sequences:

>Translated_252_residues
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAVLTENIHFYKRASSFYEEK
LLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI
ISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
AFCKDNNIQLVW
>Mature_251_residues
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAVLTENIHFYKRASSFYEEKL
LIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEII
SRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIA
FCKDNNIQLVW

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=98.4126984126984, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1789829, Length=251, Percent_Identity=29.4820717131474, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1789170, Length=234, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789059, Length=234, Percent_Identity=31.1965811965812, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=24.901185770751, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=25.2, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=25.8771929824561, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787063, Length=250, Percent_Identity=21.2, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=25.3218884120172, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1790753, Length=239, Percent_Identity=24.2677824267782, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28204; Mature: 28072

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AVLTENIHFYKRASSFYEEKLLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTL
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINS
EECCCCEEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHCEEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCEE
AFCKDNNIQLVW
EEEECCCEEEEC
>Mature Secondary Structure 
AAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNT
CCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH
AVLTENIHFYKRASSFYEEKLLIARKALPFIDNKTTMAADSSSTVMELLKLLQDRSDLTL
HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEE
LTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEIISRYHVDIMVMSCKGLDINS
EECCCCEEEEEECCCEEEEECCCCCCCCEEEECCHHHHHHHHHHCEEEEEEEECCCCCCC
GALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWI
CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCEE
AFCKDNNIQLVW
EEEECCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]