Click here to switch to the map view.

The map label for this gene is yobF

Identifier: 30062920

GI number: 30062920

Start: 1478855

End: 1478998

Strand: Direct

Name: yobF

Synonym: S1517

Alternate gene names: 30062920

Gene position: 1478855-1478998 (Clockwise)

Preceding gene: 30062919

Following gene: 30062921

Centisome position: 32.15

GC content: 42.36

Gene sequence:

>144_bases
ATGTGTGGCATTTTCAGTAAAGAAGTCCTGAGTAAACACGTTGACGTTGAATACCGCTTCTCTGCCGAGCCTTATATTGG
TGCCTCATGCAGTAATGTGTCAGTTTTATCTATGTTATGCCTGCGGGCGAAGAAAACAATCTAA

Upstream 100 bases:

>100_bases
AGATTTGTGCGTCTGATCGAGATATGTTTAAAAATGGCTTGCCATAATTAACGTTGTATGTGATAAAAGATTTCGGGTTA
AACGAGGTACAGTTCTGTTT

Downstream 100 bases:

>100_bases
GGAATTTTTCAAATGGCAAAGATTAAAGGTCAGGTTAAGTGGTTCAACGAGTCTAAAGGTTTTGGCTTCATTACTCCGGC
TGATGGCAGCAAAGATGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 47; Mature: 47

Protein sequence:

>47_residues
MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI

Sequences:

>Translated_47_residues
MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI
>Mature_47_residues
MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788127, Length=47, Percent_Identity=100, Blast_Score=97, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOBF_ECO57 (P64510)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A85794
- PIR:   F90945
- RefSeq:   NP_288260.1
- RefSeq:   NP_310561.1
- ProteinModelPortal:   P64510
- EnsemblBacteria:   EBESCT00000027483
- EnsemblBacteria:   EBESCT00000058684
- GeneID:   913814
- GeneID:   961797
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2869
- KEGG:   ecs:ECs2534
- GeneTree:   EBGT00050000009371
- HOGENOM:   HBG474392
- ProtClustDB:   CLSK880220
- BioCyc:   ECOL83334:ECS2534-MONOMER
- InterPro:   IPR019672

Pfam domain/function: PF10736 DUF2527

EC number: NA

Molecular weight: Translated: 5212; Mature: 5212

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
6.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI
CCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAKKTI
CCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796